Kosakonia sacchari: C813_24765
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Entry
C813_24765 CDS
T03601
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ksa
Kosakonia sacchari
Pathway
ksa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ksa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C813_24765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ksa03019
]
C813_24765
03009 Ribosome biogenesis [BR:
ksa03009
]
C813_24765
Enzymes [BR:
ksa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
C813_24765
Messenger RNA biogenesis [BR:
ksa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C813_24765
Ribosome biogenesis [BR:
ksa03009
]
Prokaryotic type
rRNA processing factors
C813_24765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AIA25090
LinkDB
All DBs
Position
2905719..2908865
Genome browser
AA seq
1048 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLS
LSILRLIEEEALKENTQEVHAIVPVPVASYLLNEKRAAVSAIEARQGGVRCVIVPNDQME
TPHYSVLRVRKGEETPTLSYLLPKLHEEEMALPSEEEYAERKLPEQPALATFVMPDVPPA
PQAPAASASQAQPAATPAAAPGLLSRFVSALKGLFASEPAPAPVEVKEEKKDEKQERQQD
RRKSRQGNRRDRNDRRDNRSEGNEARESRDNREGREENRRNRREKSQQNAEARESRQPAA
VDETEKAKSRDEQQQPRRERNRRRNDDKRQAQQDVKELNRDEQPAQETEQEERVQVMPRR
KQRQLSQKVRIGGDNNIETRVEETTAQDVAVQNTQLAKVDLPAVVETAPVQEQDENAEAR
ENAMPRRSRRSPRHLRVSGQRRRRYRDERYPLQSAMPLTVACASPEMASGKVWIRYPVPR
QQEEQQTQELAVENTAAPEQEIAPAMAEAQLVAHQQADVVEPQATVENAEPVVVEPQAAV
EAPQPVAVETTHPEVIDTPVDEQPQLIAEEDRTVAQEVAEEAEPAQQEVASVAETPATDA
VEETAEETAAPVVADPVKAPVVAHVAPVARKVATAPMTKAPAPAYVPDAPRHSDWVRPHF
VFEGKGSAGGHSATHAATAPATKPPVAE
NT seq
3147 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaagaagagttgcgtgtcgcacttgttgat
ggacaacgcctgtacgacctggatatcgaaagcccgggacacgagcagaaaaaagcgaac
atctacaaaggtaaaatcacccgcattgaacccagccttgaagccgcattcgttgattac
ggtgccgagcgtcacggtttcctccccctcaaagagatcgcccgcgaatacttccccgct
aattacaacgcgcatggacgtccgaacatcaaagacgtactgcgtgaaggtcaggaagtt
atcgtccagattgataaagaagagcgcggcaacaaaggcgcagcactcaccacttttatc
agccttgcgggcagctacctggtgctgatgccgaacaacccgcgtgcgggcggcatttct
cgtcgtattgaaggcgacgatcgcaccgaactgaaagaagcgctctccagcctggaatta
ccggatggtatgggtcttatcgtacgcactgcaggcgtgggcaaatccgccgaagcactg
cagtgggatttgagcttccgtttgaaacactgggaagctatccagaaagccgctgaaagc
cgccctgctccgttcctgatccatcaggaaagcaacgtaattgtgcgcgccttccgtgac
tatctgcgtcaggatatcggcgaaatccttatcgataacccgaaagtgcttgagctggct
cgccagcatatcgctgcgctgggtcgtccggatttcagcagcaaaattaaactgtacact
ggggaaatcccgctgttcagccattaccagattgagtcgcagattgaatccgctttccag
cgtgaagtccgtctgccgtccggtggttctatcgttattgactccaccgaagcgctgacc
gcgatcgatatcaactccgctcgcgcaacgcgcggtggcgatattgaagagaccgccttt
aacacgaacctggaagcggcagatgagatcgctcgccagttgcgtctgcgtgacctgggt
ggcctgattgttatcgactttattgatatgaccccggtgcgccaccagcgtgcggtggaa
aaccgcctgcgtgaagcggtgcgtcaggatcgtgcgcgtattcagatcagccatatttcc
cgcttcggcctgctggagatgtcccgccagcgtctgagcccgtcgctgggcgaatccagc
catcatgtctgcccgcgttgtagcggcaccggcaccatccgtgataacgaatccctgtcg
ctgtcgattctgcgtctgattgaagaagaagcgctgaaagaaaacacccaggaagtgcat
gcgattgtgccggttccggtcgcgtcatatctgttgaacgaaaaacgtgccgcggtaagc
gctatcgaagcccgtcagggtggcgtccgctgcgtgatcgtgccaaacgaccagatggaa
acgccgcactactccgtgctgcgcgtgcgtaaaggcgaagagacgccaacgctgagctat
ctgctgccgaaactgcacgaagaagagatggcgctgccgtctgaagaagagtacgccgag
cgtaagttacctgaacaaccagcactggctactttcgttatgccagacgttccgccagca
ccacaagcaccggccgcgagcgcgagccaggcgcaacctgccgcaacaccagcagcagcg
ccaggcctgcttagtcgtttcgtctctgcactgaaaggcttgttcgcgagtgaacctgct
ccggcgccggttgaagtaaaagaagagaaaaaagacgagaagcaagagcgtcagcaggat
cgccgtaaatcacgccagggcaaccgccgcgatcgtaatgaccgccgtgacaaccgcagt
gagggcaacgaggcgcgcgaaagccgtgataaccgcgaaggtcgcgaagagaatcgtcgt
aaccgtcgtgagaaatcacagcaaaacgctgaagcccgtgaatctcgccagccggccgct
gttgatgaaacagaaaaagcgaaatcgcgtgacgagcagcagcaaccacgccgtgagcgt
aaccgtcgtcgtaacgatgataaacgccaggcacagcaggatgtcaaagagctgaaccgc
gatgaacaacctgctcaggaaactgaacaggaagagcgcgtgcaggtcatgccgcgtcgt
aaacagcgtcagctcagccagaaagtacgtattggtggtgataacaacatagaaacccgc
gttgaagaaaccaccgcacaggacgtcgcagtacaaaacacgcaactggcgaaagtcgat
ctgccagcagtggttgaaaccgcaccggtacaggaacaggatgaaaacgctgaagcacgc
gaaaacgcgatgccgcgccgttcacgccgttctccgcgccacctgcgcgtgagtggtcag
cgtcgccgtcgctaccgtgatgaacgctatccgctgcaatctgccatgccgttgaccgtc
gcctgtgcgtcaccggaaatggcgtccggtaaagtgtggatccgctacccggttccgcgc
cagcaggaagagcagcagactcaggaactggccgttgaaaacaccgccgcccctgagcag
gagatcgctccggctatggctgaagcacaactggttgcgcatcagcaagcggacgttgtt
gagccgcaggcgacggttgaaaatgccgagccggtagtggttgaaccgcaagccgcggtt
gaagcaccgcagccggttgccgttgaaaccacccacccggaagtcatcgacacgccggtg
gatgaacaaccgcagctgattgctgaagaagatcgaactgttgcgcaggaagtagctgaa
gaagccgaacccgcacagcaggaagtcgcgtcagtagcagaaacaccagccactgatgcg
gtagaggaaacagccgaagaaacggctgcgccagttgttgccgatccggtgaaagcgccg
gtagtagcgcacgttgctccggtagcacgcaaagtggctaccgcgccaatgaccaaagcg
ccagcgcctgcctatgtgccggacgcgccgcgtcacagtgactgggtacgcccgcacttc
gtcttcgaaggtaaaggttctgcgggtggccacagcgccacgcacgccgcgaccgcgccc
gcgacgaaaccgccagttgctgagtaa
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