Komagataeibacter saccharivorans: CD178_00775
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Entry
CD178_00775 CDS
T05634
Name
(GenBank) putative DEAD-box ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ksc
Komagataeibacter saccharivorans
Pathway
ksc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ksc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CD178_00775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ksc03019
]
CD178_00775
03009 Ribosome biogenesis [BR:
ksc03009
]
CD178_00775
Enzymes [BR:
ksc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CD178_00775
Messenger RNA biogenesis [BR:
ksc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CD178_00775
Ribosome biogenesis [BR:
ksc03009
]
Prokaryotic type
rRNA helicases
CD178_00775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Motif
Other DBs
NCBI-ProteinID:
AXY21581
UniProt:
A0A347W9N8
LinkDB
All DBs
Position
842583..844334
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AA seq
583 aa
AA seq
DB search
MPFPETHPALQRALDERGYDTPTPVQKAVLDVSAEGRDLLVSAQTGSGKTVAFGIAMADT
LLGGADHFGQAGPPLAVIIAPTRELAMQVTRELTWLYAPAGGRIVSCIGGMDARREARAL
QLGAHIVVGTPGRLCDHQSRGRLDMSALRVVVLDEADEMLDLGFRDELEQLLDAMPKTRR
TLLFSATIAKEIASLARRYQNDAVRIDTLSGAKQHADIEYRAIVADARELIPAVVNVLRY
TDSQTTMVFCATREMVRHMQAALVERGFSSVALSGELGQNERTRAIDSLRKGQANVCVAT
DVAARGIDIPALALVVHATLPTDPATLLHRSGRTGRAGRKGVCVLMVPMSQRRRAERLMQ
GAKITATWSGVPTAAEIRANDARRLLADPALEQDVSEADAELVGQLVEGRSKEQLAAALL
QMYRARLPAAENVRHITPEAPRPVREGAARPPRENYESREPGAWFAMSVGRQDKADPKWL
IPLICRLGGVRKADIGAIRINDTQTLFEITPESTDKFRSCIASIENDEVQITDATAPAGG
PARRSGPPRGGRPFARKPGGGGRPGGFGGPPRSGASSRKRPRT
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgccgtttcctgaaacccaccccgccctgcaacgcgcgctggacgagcgtgggtacgat
accccgactcccgtccagaaagctgttctcgatgtttccgccgaagggcgcgacctgctt
gtttccgcccagacgggttcgggcaagaccgtcgccttcggtatcgccatggccgatacc
ctgcttggcggggcggatcatttcggccaggcgggaccgccgctggctgtcatcatcgcg
ccgacgcgcgaactggccatgcaggtcacacgcgaactgacgtggctttacgcccctgct
ggcggccgcattgtatcgtgcatcggcggcatggacgcacggcgtgaggcccgcgccctg
cagcttggcgcacatatcgtggtcggcacgccgggacggctgtgcgatcaccagtcgcgt
gggcgtctggacatgtcggccctgcgcgtggtcgtgctggacgaagcggacgagatgctt
gacctcggcttccgcgacgagcttgagcaactgcttgacgccatgcccaagacgcggcgc
acgctgctgttctcggccaccatcgccaaggaaatcgcatcgctggcgcgccgttaccag
aacgacgcggtgcgtatcgacaccctgtcgggcgccaagcagcatgccgatatcgaatat
cgcgccatcgtggccgacgcgcgggaactgatccccgccgtggtcaacgtgctgcgttat
accgacagccagaccaccatggtcttctgcgccacgcgtgaaatggtccgccatatgcag
gcagcactggtggaacgcggcttctcctccgtcgccctgtcgggtgagctggggcagaac
gagcgtacccgcgccatcgacagcctgcgcaagggtcaggccaatgtctgcgttgcaacc
gacgtcgcggcccgtggcatcgacatcccggcgctggcgctggtggtccatgcgaccctg
ccgaccgatccggccacgctgctgcaccgttcgggccgtacgggccgtgcgggccgcaag
ggcgtatgcgtgctgatggttcccatgtcacagcgccgccgtgccgagcggctgatgcag
ggtgcgaaaatcaccgccacatggtccggcgtgcccacggctgcggaaatccgcgccaat
gacgccaggcgcctgctggccgatcccgccctggagcaggatgtgagcgaagcggatgcg
gaactggtgggccagcttgtcgaaggccgcagcaaggagcagcttgccgccgccctgctg
cagatgtatcgcgcccggcttccggcagcggaaaacgtgcgccacatcacgcccgaagca
ccgcgccccgtccgtgaaggtgccgcccgtccgccgcgtgaaaattatgagagccgtgaa
cccggcgcatggttcgccatgagtgtcggccgtcaggacaaggccgacccgaagtggctg
atccccctgatctgccgccttggtggtgtgcgcaaggcggatattggcgccatccgcatc
aacgatacccagaccctgttcgagatcacgccggaatcgacggacaagttccgttcctgc
attgcctcgatcgaaaatgacgaagtgcagatcaccgacgccactgcccccgcaggtggc
ccggcgcgccggagcggtccgccgcgtggtggccgtccgttcgcccgcaagcccggtggc
ggcggccgtcccggtggctttggtggcccgccgcgcagtggcgcttcctcacgcaagcgt
ccgcgcacctga
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