Komagataeibacter saccharivorans: CD178_01612
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Entry
CD178_01612 CDS
T05634
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ksc
Komagataeibacter saccharivorans
Pathway
ksc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ksc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CD178_01612 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ksc03019
]
CD178_01612 (rnr)
03016 Transfer RNA biogenesis [BR:
ksc03016
]
CD178_01612 (rnr)
Enzymes [BR:
ksc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CD178_01612 (rnr)
Messenger RNA biogenesis [BR:
ksc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CD178_01612 (rnr)
Transfer RNA biogenesis [BR:
ksc03016
]
Prokaryotic type
tRNA degradation factors
CD178_01612 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
Motif
Other DBs
NCBI-ProteinID:
AXY22385
UniProt:
A0A347WBZ2
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All DBs
Position
complement(1708828..1711074)
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AA seq
748 aa
AA seq
DB search
MKRQRPATFQMPDSLPTGTSPARTGGLPEREQLRAFIENAPGRIGKREISREFGLGPEHR
QALRAMLREMALDGTLAPAGARRFRVSDRLPESAVVQVTGTDADGDPIARPVQWDGDGPS
PTVFMHPELRGRAALAPGERVVARLRRVGPGRYEGRTLRRLTDAPVQIVGLFRALGDTDP
AAAAPARFRPAGRLTPADRRARAEWVIPMGEDDDAPDNEIVIAIPLPQSGPGLHPARIIQ
RLGPQGDARTISMVAVAMHGIPHVFGQEALAQARAARGVSPDGRTDLRDVPLVTIDGADA
RDFDDAIYAEPDGDGFRITVAIADVAWYVRPGSALDREARLRGNSVYFPDRVIPMLPEEL
SNGWCSLRPGEDRGCIFVDMHVAADGAVSGARFGRGIMRSAARLTYEQVQAARDGAPDTT
MLSLPDGLLDSLFGAWECLSRARARRGTLDLDMPERQVHLDDAGLIESIHPRIRLDSHRL
VEEFMIAANVAAARFLEGRHVPCLYRIHAPPTPERLESLRRTLDMMGISLPPVGGLRAAD
LDRVLREVSSSDQAPLVNELVLRAQNQAEYSPDPIGHFGLSLPAYAHFTSPIRRYADLLT
HRALLVAAKLESGSAPDHTELETTGQAITQTERRAAQAERETLERYAATWLQARVGTVMD
AHISGLSRFGIFTVLDATGTSALLPMSALPEDQWHHDEKTQTLSARDATMVFRPGQALRV
RIEEACAIRGTVLLALPDTLPPRRRRRP
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
atgaagcggcagcgtccagcaactttccagatgccggacagcctgcccacgggcacatcc
ccggcccgtacgggcggcctgccggaacgtgagcagcttcgcgcgtttatcgaaaacgcg
ccgggccggatcggcaagcgcgagatcagccgggaattcggccttggtcccgaacaccgg
caggccctgcgcgccatgctgcgggaaatggcgctggacggcacgcttgccccggccggt
gcgcggcggttccgtgtatcggaccgcctgcccgaatccgccgtggtgcaggtcaccggc
actgatgccgatggcgaccccatcgcgcggcccgtgcaatgggatggcgacggaccttcc
cccaccgtgttcatgcaccctgaactgcgcggacgcgcggccctcgcccccggtgaacgc
gtggtcgcgcgcctgcgtcgcgttggtcccggccggtatgaaggccgcaccctgcgtcgc
ctgacggatgcgccggtgcagatcgtgggcctgttccgcgcccttggggacacggacccg
gcagcagcggcccccgcgcgctttcgccccgcaggcaggctgaccccggcggatcgccgc
gcaagggcggaatgggtcattcccatgggcgaggatgacgacgcgccggataacgaaatc
gtcatcgccattcccctgccccagtccgggccgggcctgcaccccgcgcgaatcatccag
cgtcttggcccgcagggcgatgcccggaccatcagcatggtggctgtggcgatgcacggc
atccctcacgtcttcgggcaggaagcactggcgcaggccagagccgcgcggggtgtctca
cccgatggtcgcacggacctgcgtgacgtgccgcttgtcaccatcgatggcgcggatgcg
cgcgattttgatgatgccatttatgccgaacccgatggggatggcttccgcattaccgta
gccatcgcggatgtcgcctggtacgtccgccccggtagcgcgctggaccgggaagcgcgt
ctgcgcggcaattcggtctatttccccgaccgggtcattcccatgctacccgaagaactg
tccaacgggtggtgctcgctccgccccggtgaggacaggggctgcatcttcgtcgatatg
cacgtcgcagccgatggcgcagtgtcgggcgcgcgctttggccgtggcatcatgcgcagc
gccgcacgcctgacctatgaacaggtgcaggccgcgcgcgatggcgcacccgataccacg
atgctgtccctgcctgacggactgctcgacagcctgttcggtgcatgggagtgcctgtcg
cgcgcacgggcacggcggggcacgctggatctggacatgccggaacggcaggttcacctt
gatgacgcgggtctgatagagtccattcacccgcgcatccgtctggacagtcacaggctg
gtcgaggaattcatgatcgcggccaatgtcgccgccgcacgcttccttgaggggcggcat
gtcccctgcctgtatcgaatccatgcgccccctacgccggaacggctggaaagcctgcgc
cgcactctggacatgatgggcatatccctaccacccgtgggtggcctgcgcgcagccgac
cttgaccgcgtcctgcgcgaagtcagcagcagcgatcaggcccccctggtcaacgaactc
gtgctgcgtgcgcagaatcaggccgaatacagcccggacccgatcggccattttggcctt
tcgctgcccgcctatgcccatttcaccagccccatccgccgctatgccgacctgctgacc
catcgcgccctgctggtcgcagcgaagctggaatcgggcagcgcaccggaccatacggaa
ctggagacaacaggtcaggccatcacgcagaccgaacgccgcgccgcacaggccgaacgc
gagacactggaacgctacgccgccacatggctgcaggcgcgcgtgggcacggtgatggac
gcgcatatatccggcctgtcacgattcggcatttttaccgttctggatgcaacgggtaca
tccgccctgctgcccatgtctgccctgccggaagatcagtggcatcacgacgaaaaaacg
cagacattatcggcacgcgacgcgaccatggtattccgccccggtcaggccctgcgcgta
cggattgaagaagcatgcgccatccggggaacagtcctgctggcacttcccgataccctg
ccgccccggcgaaggcggcggccatga
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