Komagataeibacter saccharivorans: CD178_02404
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Entry
CD178_02404 CDS
T05634
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ksc
Komagataeibacter saccharivorans
Pathway
ksc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ksc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CD178_02404 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ksc03400
]
CD178_02404 (mfd)
Enzymes [BR:
ksc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CD178_02404 (mfd)
DNA repair and recombination proteins [BR:
ksc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CD178_02404 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
AAA_16
UB2H
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AXY23152
UniProt:
A0A347WE59
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All DBs
Position
complement(2528708..2532190)
Genome browser
AA seq
1160 aa
AA seq
DB search
MNQTAGFSLAPGAPVPVWGVPDGYDAFLLARRLNEHDGPVLHVCRDDAGMARIADLLAFV
APKAEILRFPGWDCLPYDRVSPNPAIIAERVATLTRLLEKSTAPRIVLTTVGGLVQRVAP
RAAFAGQSITIRTGESLDAPFLMELLIAHGYNRTDTVMEQGEFATRGGIFDIFPAGEAEP
VRLDLFGDEVENIRRFDPGTQRSTAKIDSLTMRPVADFSLDPASISRFRTGWRDLFGPAA
ASDPLYQHISEGRRHAGMEHWLPLFHEQMETVVDYMPGVSISLANQAEEVLAARLEMIAD
HYDARRQPTREGEVPYRPLPPHLMYLDRKGWDAMITGRKAVVFMPFAQPDGAPGMDAGGR
PGQMFAKTVTDGRENVFPMLHARVEEWAQTGRRAYVTAWSRGSCERIGVLMREYRLPVQT
FATWADAQKLRPGTVGLLTLGLERGFVADNVAFVSEQDLLGERISRPPRRRKKADQFISE
ASEIAEGDLIVHQDYGIGRYDGLETIGVGTAPHDCLRLIYDGNEKLFLPVENIELLSRFG
SDQAHVALDRLGGVSWQSRKAKMKQRIRDMAGELIRTAAARALREAPALTPEDGMWDEFC
ARFPFVETEDQSRAIADVLDDMASGKPMDRLVCGDVGFGKTEVALRAAFVAAMSGAQVAV
VVPTTLLARQHYRTFSARFAGLPVKVAQLSRMVTAKEATAVRKGLTDGTVNIVIGTHALL
AKTVKFADLGLLIVDEEQHFGVAHKEKLKALREDVHVLTLSATPLPRTLQLALTGVREMS
LIATPPTDRLAVRTFIMPFDSVVIREAIQRERFRGGQVFCVVPRIEDLDRMAARLAEIVP
DARLVQAHGRLTPTELERVMTEFSDGKYDILLSTNIVESGLDMPAVNTLIIHRADMFGLG
QLYQLRGRVGRGKQRGYAYLTWPQTHVLSAAAQKRLEVMQTLDTLGAGFTLASHDLDLRG
AGNLLGDEQSGHIREVGIELYQQMLEDAVADLRTEKGRRKLQDRDWTPNIILGLPVLIPD
TYVTDLPVRLGLYRRIAALANDAEVEAMEAELVDRFGTLPDEVRNLLDVVTLKRMCREAG
VERVEAGPKGMVVQFRGNTFINPAGLVTWIAKQKEANVRLRPDHKLAIIREMTNAQRITQ
ARKVLGALVTLAREDANVTA
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgaaccagacggcaggattctcgctggcacccggcgcaccggtgcccgtgtggggcgta
cccgacgggtatgatgccttcctgctggcccgtcggctgaatgagcatgacgggcctgtg
ctgcatgtctgccgtgacgatgctggcatggcccggatcgcggacctgctggcctttgtc
gcgcccaaggcggaaatcctgcgttttccgggctgggactgcctgccgtatgaccgtgtc
tcccccaatcccgccatcattgcggagcgggtggcgacactcacccgcctgctggaaaag
tcgaccgccccacgcatcgtcctgaccacggtgggtggactggtccagcgcgtcgccccc
cgcgcagccttcgcggggcagtccatcaccatcaggacgggcgagagccttgatgcgccg
ttcctcatggaactgcttatagcccatggctacaaccgcaccgatacggtgatggagcag
ggcgagttcgccacacgtggcggcatttttgatattttcccggcaggcgaagccgagccg
gtccgtctggacctgtttggtgacgaggtggagaatatccgccggttcgatcccggcacc
cagcgctcgaccgcaaagatcgacagcctgaccatgcggcccgtggcggatttcagcctc
gatcctgcctccatttcgcgcttccgcaccgggtggcgcgacctgttcggtccggctgcc
gcgtccgacccgctataccagcatatttccgaagggcggcggcatgcgggcatggagcac
tggctgccgctgttccatgaacagatggaaacggtcgtggattacatgcccggcgtttcc
atctcgctggccaatcaggcggaagaggtgcttgccgcgcgccttgaaatgatcgccgat
cattacgacgcccgcaggcagcccacgcgggaaggggaagtgccctaccgcccgttgccg
ccacacctcatgtatctcgaccgcaagggatgggacgccatgatcaccggccggaaggcc
gtcgtgttcatgcccttcgcccagcccgatggcgcgcccggcatggatgcgggcggcagg
cccggccagatgttcgccaagaccgtaaccgacgggcgcgaaaacgtcttccccatgctg
catgcacgggtggaggaatgggcgcagaccggtcgccgcgcctatgtcacggcctggagc
cgcgggtcgtgtgaacgcattggcgtgctcatgcgcgaataccgcctgccggtgcagact
ttcgcaacgtgggccgacgcacagaaactgcgccccggtacggtgggactgcttacgctg
gggctggaacgcgggttcgtggccgataacgtggctttcgtatccgaacaggacctgctg
ggagagcggatttcccgccccccacgccgccgaaagaaagctgaccagttcatatccgag
gcatcggagattgccgaaggcgacctgatcgtccatcaggattacggcattggccgctat
gacgggcttgagacgatcggcgtcggcacggcgccgcatgactgcctgcgcctgatctat
gacggcaatgaaaaactgttcctgccagtcgaaaatatcgagcttctcagccgttttggc
tcggatcaggcccatgtggcgctggacaggctgggtggcgtgtcgtggcagtcgcgcaag
gccaagatgaagcagcgcatccgcgacatggcgggcgaactgatccgcaccgccgccgcc
cgtgcgctgcgtgaggccccggcacttacccccgaagacgggatgtgggatgaattctgc
gcccgtttcccctttgtcgagaccgaagaccagtcccgcgccatagccgacgtgctggac
gacatggcatcgggcaagccgatggaccggctcgtatgcggtgatgtgggtttcggcaag
accgaagtcgccctgcgcgcggcctttgtcgccgccatgtcgggcgcgcaggtggcggtt
gtggtaccgaccacattgctggcccgccagcattaccgcacgttctctgcccgctttgcc
gggctgccggtcaaggtcgcccagctttcgcgcatggtcacggccaaggaagcgaccgcc
gtacgcaaggggctgaccgatggcacggtcaatatcgtgatcggcacgcatgccctgctg
gccaagacggtcaaattcgctgatctcggcctgctgatcgtggatgaagaacagcatttt
ggcgtcgcgcataaggaaaagctcaaggccctgcgcgaagacgtgcatgtcctgaccctg
tcggccacgccgctgccacgcaccctgcagcttgccctgacgggcgtgcgggaaatgagc
ctgatcgccaccccgccaaccgaccggctggcggtgcgtaccttcatcatgcccttcgac
agcgtggtgatccgcgaggcgatccagcgcgagcgcttccgtggggggcaggtcttctgc
gtcgtgccgcgtatcgaggatctggaccgcatggcggcgcgcctggccgaaattgtgcct
gatgcgcgtctggtgcaggcccatggccgcctgacgcccaccgaactggaacgggtcatg
accgagttcagtgacggcaaatacgacatcctgctatccaccaatatcgtggaaagcggg
ctggacatgcctgcggtcaacacgctcatcatccatcgtgccgatatgttcggccttggg
cagctttaccagcttcggggccgcgtgggacgtggcaagcagcgtggctatgcctatctg
acgtggccacagacgcatgtgctgtccgctgcggcgcagaaacggctggaggttatgcag
acactcgatacgctgggcgcaggctttacgctggcttcccacgatctggacctgcgcggt
gcgggcaacctgctgggcgacgagcagtcgggccatatccgcgaagtgggcatcgaactc
taccagcagatgcttgaagacgcggtagccgacctgcgtaccgaaaagggacgccgcaag
ctgcaggaccgcgactggacacccaacatcatccttggcctgccggtgcttatcccggac
acctatgtcaccgacctgccggtaaggctcgggctttatcgccgcattgccgcactggcc
aatgatgccgaggtcgaggcgatggaagcggaactggtggatcgcttcggcacgctgcct
gatgaggtccgcaacctgctggatgtcgtgacgctcaagcgcatgtgccgcgaggccggg
gtggagcgcgtcgaagccggaccaaagggcatggtcgtgcagttccgtggcaataccttt
atcaacccggcggggctggtaacgtggattgcaaagcagaaagaagccaatgtccgcctg
cggcccgaccacaagctggccatcatacgcgaaatgaccaatgcccagcggattacgcag
gcccgcaaggtattgggggcattggtcacgctggcgcgggaagatgcaaacgtcacggca
tag
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