Kangiella sediminilitoris: KS2013_1060
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Entry
KS2013_1060 CDS
T04467
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ksd
Kangiella sediminilitoris
Brite
KEGG Orthology (KO) [BR:
ksd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ksd03019
]
KS2013_1060
Enzymes [BR:
ksd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KS2013_1060
Messenger RNA biogenesis [BR:
ksd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KS2013_1060
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_22
AAA_19
nSTAND3
AAA_30
TsaE
ABC_tran
nSTAND_NTPase5
NACHT
ResIII
PhoH
AAA_25
Flavi_DEAD
AAA_23
Motif
Other DBs
NCBI-ProteinID:
AOE49780
UniProt:
A0A1B3BAE5
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All DBs
Position
1148026..1151910
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AA seq
1294 aa
AA seq
DB search
MTDNITSGTSLEDCLLSDIDTIKKLKQAIAKRQKQGQPASKLEDKLERILQTSSNIVQGR
SNAIPSVIEFDDSLPVSQSRQKVAQLIRDNQVVVIAGETGSGKTTQIPKICLELGLGRRG
RIGHTQPRRVAATSVSRRIAEELKTDIGHVVGFNIRFNDQTNSVTPVKVMTDGVLLNEII
HDPLLLQYEAIIIDEAHERSLNIDFLLGYLKRLLNKRPDLKLIITSATIDVESFARHFGQ
KGEPAPVLEISGRTYPVDVWYRPNDEENPLPQTDQIGHAVQEIMAYGPGDILIFLPGEAD
IRDTAKLLRKESYQQCEVLPLYARLSISEQEKIFKPSGGKRRIVLATNVAETSITVPGIR
YVIDPGLARISRYSVRSKIQRLPIEKISQASANQRKGRCGRVAEGVCIRLYSEEDFDERK
EFTDAEILRTNLAAVILQMKQLKLGDVQDFPFINPPEERQVSDGLTLLNELQALESNKKL
TPIGKKMARLPIEPRLARILLAGEEKKYLNYALVLAAFLSVKDPREWPFDKKEKAQQKHS
KYKHKTSDFIAIINLWNYLHEQQSDLSNSAFRRYCKEELINFNAYREWKSTYRQLKSLMQ
NQTGKHKNPKEWKTAEFDQEDPVFYQQLHQVLLTGLLSFIGQKDIEKGYLGTRQSKFMIH
PQSINFKKQPPWLVTFEIVETTQPYARMTAAIEPNWLEHIASHLIKTHYYDAHWSKNRGA
VVANMQQTLLGLKIVSNRTVNYSSVEPDLCRELFIRHALVRQELDSKQPFHQHNVEVKKQ
VEQEIAKARQADLWADEHDIVNWFELQLPKSIINVKTLNKWLKKDPQKNNKMLSITPKVL
LPEEQEDKGLYPESIEVKGVELKLKYHFEPGHEKDGVTVKLPQSLTSQFTDADFERLVPG
LLEEKIEFLIRSLPKRFRKNFVPIPQFAKACYEKVLTSKGRLIDIITHHLFTMTGVILPM
EAWSELNLPEHFLMRFEVVNDEGSLLYSTRTLEEKPKKVAKTKQRKKAKLENVTYTDWPT
EYTRESSMEEAGVDFPVFNALEDAVNKVRIVPVVNKKQAEKIHIKGVCRLIALAEQKTFG
YLQKKYHNRQQLMLACASLYSAEDLINDVMMSVIKSYVSDNVPYDEDAFNECLKQVEKML
VPEANKVLDQLVGTLKARNSCLSNIKAMGKNFKAAYDDIKVQLDYLFQPGFCYRFGVDHI
RDYARYLKAIELRIERIQHNPLKDVQLQQTFKPWQDEMLELEKDNKIPQFEVDEYGWMLQ
EFRISLFAQGQKTRFPISHKRLQKFLDRLNKEYI
NT seq
3885 nt
NT seq
+upstream
nt +downstream
nt
atgactgataatattacctcgggaactagtctcgaggactgtctattaagcgacattgat
actataaagaaactcaagcaggcaattgctaaaagacagaagcaaggccagcctgcgtct
aagcttgaagacaagctggaacggattttgcaaacctcatccaacatagttcagggcagg
agtaatgcaatcccttctgtcatcgagttcgatgattctcttccagtttcacagtcacgt
cagaaagttgcacaacttataagggataatcaagttgttgtaattgccggggaaactgga
tccggcaaaacaactcaaattccaaaaatatgtctggaactgggtttaggcagaagaggg
cgaattggtcatacacaaccaagacgagtcgctgctaccagtgtgtctagaagaatagcc
gaggaacttaaaactgatatagggcatgtggttggctttaatattcgatttaatgaccaa
accaattccgtcactccggttaaggttatgactgatggagttttattgaatgaaattatt
catgaccctttattgttgcaatatgaagcaatcatcatcgacgaggcccatgaacgtagt
ttaaatattgatttcttattgggctacctcaaacgtttacttaataagcgtcccgatctg
aaactaattattacatctgcaacaatagacgttgaaagctttgccaggcactttggtcaa
aaaggtgaacccgcgcctgtacttgaaattagtggacgaacttatcccgttgatgtctgg
tatcgtccaaatgatgaggaaaatccgttaccccagacagatcaaattgggcatgccgta
caagaaataatggcatacgggcctggagatatactgatctttttacccggggaagctgat
atccgtgatacagctaaattactccgcaaggagtcgtatcagcagtgtgaggtgcttcct
ttatatgctcggctttcaatttcggaacaggaaaaaatatttaagccttcaggaggcaaa
cgtcgaatcgtcctggcaaccaatgttgcagaaacttccatcacagtccccggtattcgt
tacgtcattgatccgggtttagcgagaattagccggtactctgtgcgcagtaaaatccag
cgactacccatagaaaaaatatcacaagctagcgccaatcagaggaagggacggtgcgga
cgtgttgcggaaggtgtttgtataaggctttacagcgaagaagactttgatgaacgtaaa
gagtttactgacgctgaaattttgagaacgaacttagctgctgtcatattacaaatgaag
cagctcaagttaggtgatgtccaggatttcccttttatcaacccgcccgaagagcgacag
gtcagtgacggtctgaccctattaaatgagctacaggcgctggagagtaataaaaagctg
acacctattggcaagaagatggctcgccttcccattgaaccacgtctggccagaatacta
ttagccggagaagaaaaaaaatacttaaactatgccttagttctagcagcttttttgtcc
gtcaaagacccacgagaatggccctttgataagaaagagaaggcacagcagaaacattct
aaatataagcataaaacgtctgactttatcgctattattaacctatggaattacctgcat
gagcaacagtcggatcttagtaacagtgcttttagacgctactgtaaagaagagctgatc
aattttaatgcttaccgagaatggaaaagtacttatcgtcagctgaaaagtctgatgcaa
aatcagactgggaaacataaaaacccaaaggaatggaaaaccgctgaatttgatcaggaa
gaccctgtgttttaccagcaactgcatcaagttttgttgacaggtttactcagttttatc
gggcaaaaggatattgaaaaggggtaccttggtacacgccaaagtaagtttatgatacac
cctcagtcaataaactttaaaaagcagccaccctggctggtcacttttgaaattgtagaa
actacacaaccttatgcgcgaatgaccgcagcaatagaaccaaattggttggagcatatc
gccagtcatttgatcaaaactcattattatgatgctcactggagcaagaaccggggcgct
gttgttgctaatatgcagcaaacattattgggtttgaaaattgtaagtaatagaaccgtt
aattatagttcagttgaacctgacttatgtcgagagttatttattcgtcacgcccttgtg
cgtcaggagcttgattcaaaacaaccttttcatcagcataatgttgaggtcaaaaagcaa
gtcgagcaagagatcgcaaaagccaggcaggcggatttatgggcggatgagcacgacatt
gtaaattggtttgagcttcaattaccgaagtcaatcattaacgtcaaaacgttaaataaa
tggcttaaaaaagatccacagaagaataacaagatgctcagcataacccccaaggtatta
ttacctgaagagcaggaagataaggggctttatcctgaatcaatagaggttaaaggtgtt
gagcttaagcttaaatatcactttgaaccaggacatgaaaaagacggggtaacagtaaaa
cttccgcaaagtctaacaagtcaatttactgatgcagattttgagcgcctggtaccaggt
ttgttagaggagaaaatcgaatttttaattcgttccttgcctaagcgcttccgcaagaat
tttgttccgattcctcagtttgccaaagcttgttatgagaaggtattaacaagtaagggg
cgactgattgatattataacgcatcacctgtttacaatgacgggtgtaattttgccaatg
gaggcatggtctgagttaaatttacctgaacattttttaatgcgtttcgaagtagtaaat
gatgaagggagtttactttatagtactcgtaccctggaagagaaacccaaaaaagtagct
aagaccaaacaaaggaaaaaagcgaaattagagaatgtgacttataccgactggcctacc
gaatatacaagagagtccagtatggaagaggcgggcgttgattttcctgtatttaacgct
ttggaagatgcggttaataaagtccgtattgtaccggtagttaacaagaaacaggcagaa
aaaattcatatcaagggtgtatgcaggttaatcgctctggctgagcaaaagacttttggt
tatttgcagaaaaaatatcataatcgtcagcagctcatgctcgcctgtgcttcgctgtat
tcagctgaagacctgataaatgatgtaatgatgtccgtgattaagagttatgtttctgac
aatgttccttatgatgaagatgcatttaatgaatgccttaaacaagtcgaaaaaatgctg
gtaccagaggccaataaagttcttgatcagttagttggtactttgaaagcaagaaatagc
tgtctaagtaatatcaaggccatgggaaaaaactttaaggcagcatatgatgacattaag
gttcaactggactatctattccagcctggattttgctatcgatttggtgttgaccacatt
cgtgactatgcacgttacctcaaggcaattgagctgagaattgaaagaatacaacacaac
cctctcaaagatgtgcaattacagcaaacgtttaaaccatggcaagatgaaatgcttgag
ttggaaaaggataataagattccacagtttgaggtagatgagtatggttggatgttgcag
gagttcaggatttctctatttgctcaagggcagaaaactcgttttcctatttctcataaa
cgactgcaaaagtttctggaccgtctcaataaagaatatatttag
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