Kangiella sediminilitoris: KS2013_1072
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Entry
KS2013_1072 CDS
T04467
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ksd
Kangiella sediminilitoris
Pathway
ksd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ksd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KS2013_1072
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ksd03019
]
KS2013_1072
03009 Ribosome biogenesis [BR:
ksd03009
]
KS2013_1072
Enzymes [BR:
ksd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KS2013_1072
Messenger RNA biogenesis [BR:
ksd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KS2013_1072
Ribosome biogenesis [BR:
ksd03009
]
Prokaryotic type
rRNA processing factors
KS2013_1072
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AOE49792
UniProt:
A0A1B3BAG3
LinkDB
All DBs
Position
complement(1169430..1172261)
Genome browser
AA seq
943 aa
AA seq
DB search
MRRMLINATHHNEELRVAMVDGQRLYDLDIELAGREQKKGNIYKGKVTRIEPSLEAAFVD
YGAERHGFLPLKEVAREYMHNPPHKGRPTIKDALKEGQEIIVQIDKEERGNKGAALTTSV
SLAGSYLVLMPNNPRAGGISRRIEGEERSELKQIMNQLQVPKGMGCIVRTAGVGKSLEEI
NYDFNYLLEFWKNIKDVSSKRSAPFLITQESDVVTRAIRDYLRPDIGEIIVDRQEIHDRI
KTELQYQRPDFVHKVKYYKDEIPLFNRYQVESQIESAFQREVRLPSGGSVVFDQTEALLS
IDINSAKATKGGDIEETALHTNKEAAEEIARQLRLRDIGGLIVIDFIDMGPPRNQREVEK
VLKESVARDRARIQIGRISRFGLLEMSRQRLRPSLEESSQHVCPRCSGSGVIRGTDSLAL
SILRIMEDEAMKESTAEVQAVLPVEVATFLLNEKRRKIEQIEKRQKVRLVVVPNPHMETP
HYEVLRVKGGETLEDSSYSLIGKPPEVELVKSTTQPVAPLDEPALKGLKHSAPPPAPSTA
KKPKKKKSKKKKPSLFKRLWTALFGDKKKKQNKGKGHKKHSKNYKGKHQNQRGGQQKNRG
RYDNRNRRPDNRKQDDRKQQDNRQKQNQSQSKGQQQAKGSQYNRGRNKPQQQDKRQKQQQ
TQKQQQAPKQQPVEKRPPRKSRAERMASVEQQQPNGTKPQAEQTQVNKVQDQPQQKTQQA
SEKQNSQTSKPQNQKRHKANPEDIMVYKAHKSLERSIAEVLSDETPKESPEGPVAKEQSV
DTEKASAQPLQDNVNKEQPVNNEKQATSDNTEAEASTAPSVKQQDGQQNDNVAEKPAESV
PGLDYTQQSENEKEAEEATPAQASESEELNMEQTRAKVIAPSSSVTPAKGSSSSAPASKA
IVNEPIQAMTFAPKPYSFDGSITSKAKDSSREHSSSQAAKTSD
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atgagacgtatgttaataaacgcaactcaccacaatgaggagttgcgtgtggcgatggtc
gatggccagcgcctatatgatttagatattgagttagcaggaagagaacagaaaaaaggt
aatatctacaaaggtaaagtgacacggatcgaaccgagtcttgaagcagcttttgtagac
tatggcgctgaacgccatggcttcctccctctaaaagaagttgcgcgtgaatacatgcac
aaccctccgcacaaaggccgcccaacaatcaaggacgcacttaaagaaggccaggaaatt
attgtccagattgataaagaagaacgtggcaataaaggtgcagcattaaccacttcagtc
agtttagctggtagttatctggtattgatgccaaataacccacgagcaggcggcatctca
cgtcgtattgaaggtgaagaacgttctgagttgaaacaaatcatgaaccaacttcaggtg
ccgaagggtatgggctgcattgtccgtaccgcaggtgttggtaaaagccttgaagaaatt
aattatgatttcaactaccttctggagttctggaagaatattaaagatgtttccagtaaa
cgctccgccccattcctgattacacaggagtcggatgttgtaacacgtgcaattcgtgat
tatttgcgtccggacattggcgaaatcatcgtcgaccgccaggaaattcatgatcgcatt
aaaactgaacttcagtaccagcgacctgactttgtacacaaagtaaaatattacaaagac
gagattccattatttaatcgttatcaagtcgaaagccaaattgaaagtgcgttccagaga
gaagtccgcctaccttcgggtggctcggtagtttttgaccaaacagaagcgcttctttct
attgatatcaactccgctaaagcaactaagggtggcgatatcgaagaaacagctcttcat
acaaacaaagaagcagctgaagaaattgcacgccaattacgtcttcgtgatattggtggc
cttattgttattgactttatcgatatgggaccgccccgaaatcaacgtgaagttgaaaag
gttctaaaagagtcagtagcgcgagatcgagctcgtatacagatcggccgtatctcaaga
tttggactattagagatgtctcgccaacgtttgcgcccttctcttgaagagtcaagtcag
cacgtatgtccacgttgtagtggttctggtgtgattcgaggtacagattccctggctctt
tcaattcttcgtataatggaagacgaagctatgaaggaatctacagccgaggtacaagct
gtactaccagttgaagttgcaacattccttctaaacgaaaaacgtcgcaaaatcgagcag
atagaaaaacgccagaaagtaagactagtagtagtgcctaatccacatatggagacccct
cactacgaagtactacgtgttaaaggtggcgaaactcttgaagatagtagctatagcctg
attggcaaaccgcctgaagttgaacttgtgaagagtacgactcaaccggtagcacccctt
gatgagcctgctctaaaaggcttgaagcatagtgccccgccaccagctccttcaacggct
aaaaaaccgaaaaagaagaagtctaaaaagaagaaaccaagtctatttaagcgtttatgg
acagccctgttcggcgataagaagaaaaagcagaataaaggcaaaggccataaaaagcac
agcaaaaactacaaaggtaaacaccaaaatcaacgtggtggacaacaaaaaaatcgtggc
cgttatgacaatcgcaaccgtcgccctgataaccgcaaacaggatgatcgtaaacagcag
gacaatcgccaaaagcaaaatcaaagccaaagtaaaggccagcaacaagcaaaaggtagc
cagtacaaccgtggccgcaataagccgcaacaacaagataaacgccagaagcagcagcag
acacagaagcagcagcaagctccaaaacagcagcctgttgaaaagcgtccgccaagaaag
tcacgtgctgaaagaatggcatctgtagagcagcagcaaccgaatggcactaagccacag
gctgagcaaactcaagttaataaagtacaggatcagcctcagcaaaagacgcagcaagcc
agcgagaaacaaaactcacaaactagcaaacctcagaatcagaaaaggcataaagccaat
cctgaggatattatggtctataaagcgcataagtcgctagaacgtagcattgccgaagtt
ctttctgatgagacaccaaaggaaagtccagagggtcctgtagctaaagagcaatctgta
gatactgaaaaagccagcgctcagcctttacaggacaatgtgaataaagagcaacctgta
aacaacgagaagcaagcaacctcagataataccgaagccgaggcttctactgcaccttca
gttaaacaacaggatgggcaacaaaacgataacgttgctgaaaaacctgctgagagtgtt
cctggtttggattacactcaacagtctgagaacgaaaaggaagcagaagaagcaacacca
gcacaggctagtgaaagcgaagagctcaatatggaacaaacaagagctaaagttattgcg
ccttcttcttcagttacacctgctaaaggctcgagctctagtgctcctgcaagtaaagct
attgttaacgagccaatccaggcaatgacatttgctccaaaaccctacagctttgatggt
agtattacatcaaaagctaaggacagctcacgagaacacagctcctcgcaagcagctaaa
acgagcgattaa
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