Kangiella sediminilitoris: KS2013_1994
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Entry
KS2013_1994 CDS
T04467
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ksd
Kangiella sediminilitoris
Pathway
ksd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ksd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KS2013_1994
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ksd03021
]
KS2013_1994
03400 DNA repair and recombination proteins [BR:
ksd03400
]
KS2013_1994
Enzymes [BR:
ksd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KS2013_1994
Transcription machinery [BR:
ksd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KS2013_1994
DNA repair and recombination proteins [BR:
ksd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KS2013_1994
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
7TMR-HDED
DOCK-C2
Motif
Other DBs
NCBI-ProteinID:
AOE50703
UniProt:
A0A1B3BD69
LinkDB
All DBs
Position
complement(2141768..2145835)
Genome browser
AA seq
1355 aa
AA seq
DB search
MAYSYTEKKRIRKDFGRRSKILDVPYLLAIQLDSYREFLEPKGDNDSGLDAAFKSIFPIE
SYSGNAALEYVSYSMGEPVFNVKECQIRGITYSAPLRVKIRLVIYDKDSKTKKVKDIREQ
EVFMGELPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDRGKTHSSGKLLYQARVIPYR
GSWLDFEFDPKDMLYVRIDRRRKLPASIILRALEYSTQDMLDMFFERNNFYITKDGGIQL
ELVPSRLRGETATFDIKAKGKVVVEEGRRITPRHITKLEDAGVKKLDVPTEYIYGRALAT
DIIDKDSGEVIAEANAEITEELLEALIDANVTDVPTLYTNDLDHGPYMSDTLRSDSTKTA
LEAKVEIYRMMRPGEPPTQEAAEGLFDNLFFNQERYDLSRVGRMKFNRRVGRDEIEGEGT
LSNEDIIDVMKTLIDIRNGNGTVDDIDHLGNRRIRCVGEMAENQFRVGLVRVERAVKERL
SQAESENLMPQDLINAKPVSAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALGPGGLT
RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLACYARTNDYGFLETPYRRVKDGKP
TGDVDYLSAIDEGKYIIAQANANLDKNGKFSDELVPSRNQGEFMLATPEQVEYMDVSPQQ
IVSVAASMIPFLEHDDANRALMGSNMQRQAVPTLRAEKPLVGTGMERAVAVDSGVVVAAK
RGGIVDQVDASRVVIRVNEDEVGDNDSGVDIYNFTKYTRSNQNTCINQRPIVKQGDVIER
GDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILISENVVKEDRLTSIHIQELTCI
SRDTKLGPEEITSDIPNVGESALSNLDESGIVYIGAEVKPGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDTSLRVGTSTYGTVIDVQVFTRDGVEKDARAKEIENSEVARAKKD
INDEFRILSESIYQRARNLVTGCVAEKGPNKLKKGSKVTVDYLDELEPSQYLDIQLRVEE
KQQALESLANYLAEQRKEYDKKFDIQKIKITQGDDLQPGVQKIVKVYLAVKRRIQPGDKM
AGRHGNKGVISNIVPVEDMPYDEHGVPVDIVLNPLGVPSRMNIGQILETHLGWAAKGVGE
KIGELLDTGKAPKTVKTFLNKVYNHRDDKTVDLSEMSDEEVMTMAGNLRNGVPMATPVFD
GATEADIHAMYDLAELPKTGQTWLYDGRTGDKFERPVTVGYMYMLKLNHLIDDKMHARST
GSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTRMYKNI
VDGNHRMEPGMPESFNVLTKEIKSLAINIELEHDE
NT seq
4068 nt
NT seq
+upstream
nt +downstream
nt
atggcatattcttacactgagaaaaaacgaatccgcaaggattttggtcgacgttcaaag
attctcgatgtgccttatctgttggcaattcaattggattcataccgtgaattccttgag
ccaaaaggcgataacgattctggtttggacgcagcgttcaaatcaatcttccctatcgaa
agttattcaggtaatgctgctctggagtacgttagttactcaatgggagagccagtattc
aatgttaaggaatgccaaatacgaggcattacttactctgcgccacttcgcgtgaaaatt
cgattagtaatctacgataaagattctaagacgaaaaaggttaaagacattcgtgaacag
gaagtgttcatgggtgaactaccattaatgacagagaatggtactttcgtcattaacggt
acggaacgtgttattgtttctcagttacaccgtagtccgggtgtgttcttcgactcagat
cgaggtaaaactcacagctctggtaagttgttgtaccaggcgcgagtgattccttaccgt
ggttcatggttggactttgagttcgatcctaaagatatgctttacgtgcgaatcgaccgt
cgccgtaaattaccagcatcgattatcttgcgtgctttggaatactctacgcaagatatg
ctggatatgttcttcgagcgaaataacttctatatcactaaagatggtggcatccagctt
gagctcgtgccgtctcgtttacgtggtgaaacagctacttttgatattaaagcaaaaggt
aaagttgttgttgaagaaggtcgccgtattacaccgcgtcatatcacgaaacttgaagat
gccggtgtgaaaaaattagatgtgccaaccgagtacatctatggtcgtgccttggcaact
gacatcattgataaagattctggtgaagtaattgcagaagcaaatgcagaaattactgaa
gaacttttagaagcattaattgatgcaaatgttacggacgttcctacattgtataccaac
gatctggatcacggcccgtacatgtcagataccttgcgttcagactcaaccaaaacagca
ctcgaagcgaaagttgaaatttatcgcatgatgcgtcctggcgagccgccaacgcaagaa
gccgctgaaggtttgttcgacaacttattcttcaaccaggagcgttacgacttatctcgc
gttggtcgaatgaagttcaaccgtcgtgttggtcgtgatgaaatcgaaggtgaaggtaca
ttatcgaatgaagacatcattgatgttatgaaaacattgatcgatatccgaaacggtaat
ggtactgtagatgatattgaccacttgggtaaccgccgtattcgttgcgtaggtgaaatg
gcagaaaaccagttccgtgtgggtctggttcgtgttgagcgtgcggtaaaagaacgtttg
tcgcaagctgaaagcgaaaacttgatgcctcaggatttgatcaacgcaaaacctgtatct
gctgcagttaaagaattctttggctctagccagctgtcacagtttatggatcaaaacaac
ccgctatcagaagtgactcataagcgtcgtgtatcggcgttaggtcctggcggtctaaca
cgtgaacgtgcaggtttcgaggttcgagacgtacacccgactcactatggtcgtgtctgt
cctattgagactccagagggtccaaacattggtttgattaactcgctggcatgttacgca
cgcacgaatgactatggtttccttgaaaccccataccgtcgtgtaaaagatggtaagcct
actggcgatgttgactatctatctgcaattgatgaaggtaaatacatcattgctcaggca
aacgccaaccttgataagaacggtaaattcagtgatgaactagtgccttctcgtaatcag
ggtgagtttatgctggcgacccctgaacaggttgagtatatggatgtatcgccacagcag
atcgtttctgttgcggcaagtatgattccattccttgagcacgacgatgcgaaccgtgca
ttgatgggctctaacatgcaacgtcaggcggttcctacacttcgtgctgaaaaaccactg
gttggtacaggcatggagcgtgcagtagcagtggattctggtgttgtcgtagctgctaag
cgtggcggtattgttgaccaggtagacgctagccgtgtagttatccgcgtcaatgaagat
gaagtgggtgataacgattctggtgtagatatctacaactttacaaaatacacgcgttct
aaccagaacacttgtattaaccagcgacctatcgttaagcaaggtgacgtgattgaacgt
ggtgatgtattggctgatggtccttctaccgatttaggtgagttggcacttggccagaat
atgcgtgtagcgttcatgccttggaacggttacaacttcgaggattcgattctaatttct
gagaacgtggttaaggaagatcgattaaccagtatccatattcaggaattaacctgtatc
tctcgtgataccaagttaggtccagaagaaattacttctgatatcccgaacgtaggtgaa
agtgcactgagcaaccttgacgagtcaggtattgtttacatcggcgctgaagttaaacct
ggtgatattctggttggtaaggtaacgccaaaaggtgaaacacagttaacacctgaagag
aaacttttgagagcaatcttcggtgaaaaagcgtcagacgttaaagatacttcactacgt
gttggtacatctacttacggtaccgttatcgacgtacaggtatttacccgtgatggcgta
gaaaaagatgctcgtgctaaagaaattgaaaacagcgaagttgctcgcgccaagaaagat
atcaatgacgaattccgtattctgtcagaaagtatctaccagcgtgcacgtaacctggta
acaggctgtgttgctgaaaaaggccctaacaagctgaagaaaggtagcaaagtaactgtt
gattaccttgatgaacttgagccgagtcagtatctggatatccaattacgcgttgaggaa
aaacagcaggcactagaaagcctggctaactaccttgcagaacagcgtaaagagtacgat
aagaaatttgatatccaaaaaatcaaaatcactcaaggtgatgatttacagcctggtgtt
cagaagatcgttaaggtctatctggcagttaagcgccgtatccagcctggtgacaaaatg
gcgggacgtcacggtaacaaaggtgttatttcgaacattgttccagtggaagatatgcca
tatgacgaacatggtgtaccagtagatatcgtcttgaatccactgggtgtaccttctcgt
atgaacatcggtcagattctggaaactcatctgggttgggctgctaaaggtgttggtgag
aaaatcggtgagctgttagacactgggaaagcaccaaaaacagttaaaactttcttgaac
aaagtttataaccaccgcgatgataagactgtcgatttatcagaaatgtctgatgaagaa
gttatgaccatggcaggtaaccttcgtaacggtgtaccaatggcaacgccagtatttgat
ggtgctaccgaggctgatattcatgcgatgtatgacctggctgaactaccaaagaccggt
cagacatggttgtatgatggccgaactggcgataagtttgagcgcccggtgacagtaggt
tacatgtacatgctgaaattgaaccacttgattgacgataagatgcatgctcgttcaaca
ggttcgtacagtctggtaacgcagcaaccattgggtggtaaagctcaattcggtggtcag
cgtttcggtgagatggaagtttgggcacttgaggcgtatggtgcagcttatacacttcaa
gagatgctgacagttaagtcggatgatgtgaatggtcgtacgcgtatgtacaaaaacatc
gttgatggcaaccatcgcatggagcctggcatgccagagtcgttcaatgtattaactaaa
gagattaagtctcttgccattaacattgaacttgagcatgacgagtaa
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