Kangiella sediminilitoris: KS2013_2094
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Entry
KS2013_2094 CDS
T04467
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ksd
Kangiella sediminilitoris
Pathway
ksd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ksd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KS2013_2094
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ksd03019
]
KS2013_2094
03016 Transfer RNA biogenesis [BR:
ksd03016
]
KS2013_2094
Enzymes [BR:
ksd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
KS2013_2094
Messenger RNA biogenesis [BR:
ksd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KS2013_2094
Transfer RNA biogenesis [BR:
ksd03016
]
Prokaryotic type
tRNA degradation factors
KS2013_2094
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
S1_RRP5
KH_2
KH-I_KHDC4-BBP
OB_RRP5_4th
KH_NusA_2nd
NuiA_2
Motif
Other DBs
NCBI-ProteinID:
AOE50799
UniProt:
A0A1B3BD94
LinkDB
All DBs
Position
complement(2248721..2250841)
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AA seq
706 aa
AA seq
DB search
MDYTKKSFQYGGREVTIETGRVARQASGAVIVDVEGTTAFVSVVGKKEAKEGQDFFPLTV
NYQEKTYAAGKIPGGFLKREGRPSDEETLTARLIDRPLRPLFPEGFVNEVQVVITIVSIN
PEIDPAVPSMIGASAALAISGIPFGGPIGAARVGYIDGEYALNPTTTDMANSKLDLMVAG
TDKAVLMVESEADELPENVMLGAVMYGHQELQVAIQAIKELQAEAGKPAWDWKAPEKNTE
LYNAVKEKMHGAIVEAYQIAEKADRYEKISELSAEAVEALAGEEEGQPSEDEVKDIFHDI
EKEVVRSRIVSGQPRIDGREPDMVRALDIRTGVLPRTHGSAVFTRGETQALVVATLGTER
DAQIKDSIMGEGKDHFMMHYNFPPYCVGETGFMGSPKRREIGHGRLAKRGVAAMVPSIAD
FPYTLRVVSEITESNGSSSMASVCGTSLALMDAGVPMKAPVAGIAMGLVKEGENFVVLSD
ILGDEDHLGDMDFKVAGTSDGITALQMDIKIDGITQEIMEKALHQAKGGRLHILSVMNEA
IDKPRDDISEHAPRITAIKIPVDKISEVIGKGGSTIRALTEETGATIEIEDDGTVKVASS
DSEGAAEAVRRIEMMTMEITAGMEFDGKVVRIADFGAFVELTPGRDGLVHISQIAHERVN
KVTDYLKEGDIVKVKVLEVDRQGRIRLSMKALIDQPEQEEAPAGQE
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
gtggattatacaaaaaaatcatttcaatacggtggccgcgaagtcactatcgaaacagga
cgagtagctcgtcaggcatcaggtgcagttattgttgatgttgaaggcactacagcgttc
gtatccgttgttggtaaaaaagaagcgaaagaaggtcaagacttcttcccgctaactgtt
aactaccaagagaaaacatacgcagcgggtaagatcccaggtggctttttaaagcgagaa
ggtcgcccttcggatgaagaaacattaacggctcgtttaatcgaccgtccattacgtcca
ttattcccagaaggtttcgttaacgaagtacaggtagtaattactatcgtttcgattaac
ccagagatcgatccagcagtaccatcaatgattggtgcttcagctgcattggctatttct
ggtattcctttcggcggtccaatcggcgcagcacgagttggctacattgatggcgaatac
gctcttaacccaaccacgaccgacatggctaactcaaagttagacttaatggttgcgggt
acggataaagctgttctgatggttgagtcagaagctgacgagttacctgaaaatgtaatg
cttggtgctgtgatgtacgggcatcaggaacttcaggttgccattcaggcgattaaagaa
ttacaagccgaagcgggtaaacctgcttgggactggaaagctccagagaaaaatactgag
ctatacaatgccgttaaagaaaaaatgcacggtgctatcgttgaagcgtatcaaatcgct
gagaaagcagatcgctatgagaaaatcagcgaactatctgcagaagcagttgaagctttg
gcaggtgaagaagaaggccagccttctgaagatgaagtgaaagatatcttccacgacatc
gaaaaagaagttgtacgttctcgtatcgtttctggtcagccacgtatcgatggtcgtgag
ccagatatggttcgtgcactggacatccgtacgggcgttttaccacgcacacacggttct
gcagtatttacacgtggtgaaactcaggcgttggttgttgcaaccttaggtactgagcgt
gacgcgcagattaaagatagcattatgggtgaaggcaaagaccacttcatgatgcactat
aatttccctccttactgcgtaggcgaaactggctttatgggttctcctaagcgtcgtgaa
attggtcacggtcgtttggctaagcgcggtgttgctgcgatggtacctagtattgctgat
ttcccttacacactgcgtgttgtttcggaaattactgagtcaaatggttccagctcaatg
gcttctgtttgtggtacgtcattagcattaatggatgctggtgtaccgatgaaggctccg
gtcgctggtatcgctatgggcttagtaaaagaaggcgagaacttcgtggttctttctgac
atcctgggcgatgaagatcaccttggtgatatggactttaaagtagctggtacttctgat
ggtattacagcacttcaaatggacatcaaaattgacggtatcactcaagaaatcatggaa
aaggcactacaccaggcgaaaggtggccgtttgcatatcttgagcgttatgaacgaagcg
attgataagcctcgtgatgatatctctgagcatgctccacgtatcacagcgattaagatt
ccggtagacaagatttcagaagttatcggtaaaggtggttctactatccgcgccctaaca
gaagaaactggcgctacgatagaaatcgaagacgatggtacggtaaaagtagcatcaagc
gattcagagggtgctgcggaagccgtacgtcgcatcgaaatgatgaccatggaaataaca
gcaggcatggaatttgatggtaaggttgtccgtatcgcagatttcggtgctttcgttgag
ttgactcctggacgtgatggtctggtacacatttcacaaatcgctcacgagcgtgtgaac
aaagtaacagactacctgaaagaaggtgacattgttaaagttaaagtacttgaagttgac
cgccaaggtcgaattcgcctaagtatgaaagctttgattgaccaacctgagcaagaagaa
gcgccagctggtcaagagtaa
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