Kangiella sediminilitoris: KS2013_2289
Help
Entry
KS2013_2289 CDS
T04467
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ksd
Kangiella sediminilitoris
Pathway
ksd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ksd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KS2013_2289
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ksd03021
]
KS2013_2289
03019 Messenger RNA biogenesis [BR:
ksd03019
]
KS2013_2289
Transcription machinery [BR:
ksd03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
KS2013_2289
Messenger RNA biogenesis [BR:
ksd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KS2013_2289
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
Fungal_virus_P2_C
AAA_22
AAA
AAA_25
S1CSD-TOTE-2
Spore_III_AA
DUF5662
Motif
Other DBs
NCBI-ProteinID:
AOE50993
UniProt:
A0A1B3BDZ9
LinkDB
All DBs
Position
complement(2449219..2450475)
Genome browser
AA seq
418 aa
AA seq
DB search
MNLTELKQKSARELSEMAKAVGLEHMARMRKQDIIFGLLKNHAKSGEDIFGGGVLEILPD
GFGFLRSAEGSYLAGPDDIYVSPSQIRRFNLRTGDTIFGKIRPPKDQERYFALLKVAEIN
YDSPENSRRKLLFENLTPLHPDDRMRMERGNGSTEDITARVIDLAAPIGKGQRALIVSPP
KAGKTMMLQNIAQSITNNHPECMLIVLLIDERPEEVTEMERSVKGEVVASTFDEPAARHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDF
NRSGSRKEDLLTTQEELQKMWILRKILHPMDELDAIEFLIDKMAMTKTNDEFFTSMKK
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttacagaattaaagcagaaatccgctcgagaactgtctgaaatggcaaaagcc
gttggtcttgagcacatggcgcgcatgcgcaaacaagacatcatcttcggtcttctaaaa
aatcacgccaaaagcggcgaagatatttttggtggtggggtattggaaattttacctgat
ggttttggtttcttacgttcagcggaaggatcatacctggctggcccagatgatatttat
gtctctccaagccagattcgtcgtttcaacctacgcacgggtgatacgatatttggcaaa
atacgcccacctaaagatcaggaacgctattttgccctattaaaagttgctgaaatcaat
tacgacagcccagaaaactctcgccgaaaacttctcttcgaaaatttaactccactacat
ccagatgaccgtatgcgcatggagcgtggtaatggttcgacagaagatattacggcacgt
gttattgatctggctgctccaattggtaaaggtcagcgtgcgcttatcgtgtcgccacct
aaagccggtaaaaccatgatgttacagaacatcgcacagtcgattaccaacaatcaccct
gaatgtatgttgattgtattgttgattgatgagcgtccggaagaagttacggaaatggag
cgttcggttaaaggagaagttgttgcttcgacttttgatgagccagctgctcgtcacgtg
caggttgccgaaatggttattgaaaaagccaagcgtctggtagagcacaagaaagacgtg
gttatcctgctcgactcgattactcgtcttgcacgtgcctataacacggttgttccatca
tcaggtaaagttttgaccggtggtgttgatgctaacgctctgcaacgcccaaaacgtttc
ttcggtgctgcccgaaatatcgaagaaggcggtagcttaaccattatcgcaacggcgctg
gtagatactggctctaagatggacgaagtcatctacgaggagtttaagggaacgggtaac
atggagcttcacctatctcgtaagatagctgaaaaacgtgtattcccagcgattgatttc
aaccgctcaggttcgcgtaaagaagacttattaacaactcaggaagaacttcagaagatg
tggattttacgtaaaatcttacatccaatggatgagttagatgctatcgaattcttgatc
gataagatggcgatgacgaagacgaacgatgagttcttcacatccatgaaaaaataa
DBGET
integrated database retrieval system
