Kangiella sediminilitoris: KS2013_381
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Entry
KS2013_381 CDS
T04467
Name
(GenBank) Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
ksd
Kangiella sediminilitoris
Pathway
ksd03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ksd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
KS2013_381
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ksd03400
]
KS2013_381
Enzymes [BR:
ksd01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
KS2013_381
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
KS2013_381
DNA repair and recombination proteins [BR:
ksd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
KS2013_381
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AOE49106
UniProt:
A0A1B3B8M8
LinkDB
All DBs
Position
complement(383625..384434)
Genome browser
AA seq
269 aa
AA seq
DB search
MPELPEVETTTRGLSPHICGQKILQVNIYQPQLRWPVPEVLQQLEGQVSHDIERRAKYML
WRFAKGTVVMHLGMSGAMRVVDADTPLRKHDHFEVVFDNGKALRLNDPRRFGAILWQPKG
QSLEIIDSLGPEPLSEEFNGKYLHQKLSKRKGAIKNAIMTNAVVVGVGNIYASESLFLSG
IHPKRAANRISLKRCRLLAFNIKEVLAKAIKQGGTTLKDFTQTDGSPGYFSQELNVYGRE
GQACNKCQTPIKNIVLGQRSSFYCPRCQR
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgccggaattacctgaagtagaaaccacgacccgcggattatcgccacacatttgtggg
caaaagattcttcaagttaatatttatcaaccacagttacgctggccagtacctgaagtg
ttgcaacagcttgagggtcaggttagccatgatatagagcgtagagcaaaatatatgttg
tggcgtttcgctaaaggtaccgtggtaatgcaccttggaatgtcaggagccatgcgtgta
gtagacgccgatacaccattaagaaaacatgatcacttcgaagtggtatttgataatggc
aaagccctacgccttaatgaccctcgtcgatttggagctatcttgtggcaacccaaaggg
cagtctcttgagattattgactctctgggtccagaaccattatcagaagagtttaatggc
aaataccttcaccagaagctctctaagcgcaaaggggccatcaaaaacgctatcatgacc
aatgccgttgtggtcggcgtgggtaatatctatgccagcgagtctctttttttaagtgga
attcatcccaaacgagcggctaaccgaataagcttaaaacgttgccgtttactcgcattc
aatattaaggaagtgctagcaaaggccattaagcaaggtggcaccacactaaaggacttc
actcaaacagacggctcaccgggttatttttctcaagaactcaatgtttacggccgcgag
gggcaagcctgcaataagtgccagacacctatcaaaaatatagttctaggacaacgctcc
agcttttactgcccacgttgtcaacggtaa
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