KEGG   Kwoniella shivajii: 87952302
Entry
87952302          CDS       T10982                                 
Symbol
IL334_000171
Name
(RefSeq) pre-mRNA-splicing factor RSE1
  KO
K12830  splicing factor 3B subunit 3
Organism
ksh  Kwoniella shivajii
Pathway
ksh03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ksh00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    87952302 (IL334_000171)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ksh03021]
    87952302 (IL334_000171)
   03041 Spliceosome [BR:ksh03041]
    87952302 (IL334_000171)
   03036 Chromosome and associated proteins [BR:ksh03036]
    87952302 (IL334_000171)
Transcription machinery [BR:ksh03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    SAGA/TFTC/STAGA complex
     87952302 (IL334_000171)
Spliceosome [BR:ksh03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    87952302 (IL334_000171)
 Complex B
    87952302 (IL334_000171)
 Complex C
   U2 SnRNP specific factors
    87952302 (IL334_000171)
Chromosome and associated proteins [BR:ksh03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    STAGA complex
     87952302 (IL334_000171)
    TFTC complex
     87952302 (IL334_000171)
SSDB
Motif
Pfam: Beta-prop_RSE1_2nd CPSF_A Beta-prop_RSE1_1st Beta-prop_EML
Other DBs
NCBI-GeneID: 87952302
NCBI-ProteinID: XP_062788008
UniProt: A0ABZ1CNZ4
LinkDB
Position
1:join(423882..424032,424142..424164,424246..424300,424377..424491,424558..424620,424753..424867,424923..425015,425074..425167,425226..425428,425479..425657,425716..426074,426142..426554,426610..426687,426740..427116,427199..427487,427589..427795,427855..427980,428037..428525,428613..428831)
AA seq 1215 aa
MHLLNLTLQAPSNITSATVGSFSGTKGQEILAVRGSTKLEILKLNTSTGQLDTICSTEAF
GTVRNVVGFRLAGMTKDYILASSDSGRLSILEFVVTPTPHFESLYQEVYGKSGSRRVVPG
QYLAVDPKGRSCLVGASKLVYVLNRNSEGKLFPSSPLEAHRNHSLVTHIVGVDQGYDNPL
YAALEMDYSESDEDPTGEAYENVQKYLTFYELDLGLNHVVRKWSEPTDRRANLLVQVPGG
QNANSDRFDGPSGVLVCTENHIIWKHMDVEAHRIPIPRRRNPLAQKGESSKGLIIVAAVM
HKIKGAFFFLLQSEEGDLYKVWIEHEGEDVKALKIKYFDTVPVANSLCILKSGYLFVASE
FSDQNLYQFQALGDDDGEQEWSSIDYPDNGNVEGPLPFAFFNPRPSQNLLLVDTLSSLDP
ITDASVVNLQGASSDTPQIYAACGRGPRSTFRTLKHGLDVSVLVSSPLPGVPTNVWTLKL
TEEDEYDSYIVLSFPNGTLVLSIGATIEEVNDTGFLSSGPTLAVQQLGDQGLLQVHPYGL
RHIRAADRVDEWPAPPGQTIVAATTNKRQVVIALSTAELVYFELDPEGSLSEYQDKKSLP
GNATCLSIAEVPEGRRRTPFLAVGCDNQTVSVISLEPDSTLTTLSLQALTAPPASICLAE
IFDTSIDKNRATMFLNIGLANGVLLRTVVDPVDGSLSDTRLRFLGAKPPKLVRSTIHGQP
SVMAFSSRTWLLYTYQDMLQTQPLIYDTLEYAWNLSAAMCPDGLIGISGNTLRIFTIPKL
GEKLKQDILPLSYTPRKFVSHPYNTVFYMIESDHRTYAPSTIQRIIGEKEASGNRVDKSV
LELPANEFGRPRAGAGHWASLLRVLDPLNNESLATFDLDEDEAAFSIAIAYFERGGGEPF
LVVGTGVKTTLTPKGCQEGWLRVYAIKEQGRVLEFMHKTKTDDVPLCLAAFQGFLLAGIG
KSLRLYEMGKKALLRKCENNSFPTGVATINVQGARIIVGDMQESTFYCVYRSVPTRQLLV
FADDTQPRWLTCVTEVDYETIVCGDKFGNIFLNRLDQRVSENVDDDPTGATILHEKSFLM
GAAHKTELLAHYNVGSIVTSITKVPLVAGGRDVLVYTTISGTVGALIPFVSVDDVEFMST
LELHMRSHNVSLVGRDHLAYRGYYVPVKGVIDGDLCENFNLLPYSKQQAIAADLDERSVG
DVLKKLEQMRTSSAF
NT seq 3648 nt   +upstreamnt  +downstreamnt
atgcatttactcaatcttacactgcaagctccatcgaatataacttcggcaacagtcggt
agtttctctggaacgaaaggacaagagatattagctgttagaggttcaactaagttggag
atattgaagttgaatacttctactggacaactggatacgatatgttcaacagaggcattc
ggtacagtaaggaatgttgtgggattcagattggcgggaatgacaaaagactacatctta
gcatcatctgattcaggtagattatcaatcttggaatttgtcgttacgccaacaccacat
ttcgaaagtttgtatcaagaagtatatggtaaatcaggtagtcgacgagtggtacccgga
caatacctagcagtagatccaaaaggacgaagttgtttggtaggagcatcaaaacttgtt
tacgtgttaaaccgaaattcagaaggaaaattgttcccatcatccccattagaagcccat
agaaatcacagtttggtgacgcatattgttggtgtagatcagggttatgacaatccactc
tacgctgcattggaaatggactattcagaaagtgacgaggatccaacaggagaggcatac
gagaatgtacaaaagtacctcactttctatgagcttgatttgggtctcaaccatgtagtg
agaaaatggagtgagccaacggatagaagagcaaacttgctagtgcaagtacctggtggc
caaaatgccaattctgatagatttgacgggccttctggtgtactggtctgtacagagaac
catatcatttggaaacatatggatgtagaagcacatagaatacccatacctagacggaga
aatccgttagctcaaaagggagaaagcagtaaaggactgatcatcgttgcagcagtgatg
cataagatcaagggcgccttctttttcttgctacaatcggaggaaggagatttgtataaa
gtatggatagaacatgaaggagaggatgtcaaagcgctcaaaattaaatattttgatact
gttccggtggcaaacagtctgtgtatcttgaagagtggttatctcttcgtagcaagcgaa
ttcagtgaccagaacttgtaccaatttcaagctctaggtgatgatgatggagagcaagag
tggtcttcgatcgattaccctgataacggcaatgtagaaggaccccttccattcgctttc
ttcaatcctcgaccatcgcaaaatctgctgctggtagacacgctctcttccctagatcct
atcacagacgcttccgtcgttaaccttcaaggagcaagctcggacacccctcagatctat
gccgcttgtggtagaggtccaagaagtacatttagaactctcaaacacggattagacgtt
tctgtattggtcagctcacctttacctggtgtacccaccaacgtctggactctgaaatta
acggaagaagatgaatatgactcctatatcgtcctctctttccccaacggtacactcgtt
ctctccatcggtgcgactatcgaagaagtgaacgatacgggatttttatcttcgggtcct
acgcttgctgttcaacaactcggcgatcaaggcttgttgcaagtgcatccttacggtttg
cgacatattcgagctgcggatcgtgtagatgaatggcccgcacctccaggtcaaacaatc
gttgctgctaccaccaacaagaggcaggttgtcatagcgctcagtacagctgaactagtc
tatttcgagcttgaccctgaaggatcattgagcgagtatcaagacaagaagtcattacct
ggtaatgccacttgtctaagtattgccgaagtacctgagggaagaagacgaacgcctttc
ttggccgttggttgtgataaccaaacagtatcagtcatctccctcgaacctgacagcact
cttactaccctttcccttcaggcgttgaccgctccacctgcctctatctgtctagccgag
atctttgacacttccatcgataaaaatcgagctacgatgttcttgaacattggtctggct
aatggtgtactgttgagaacagtcgtggaccccgtagatggatcgctatccgatactcga
ctgcgattcctcggtgcaaaaccgcccaaactcgtcagatctactatccatggacaacct
tccgtgatggcgttctcaagtcgaacttggttactatacacatatcaagacatgctccaa
actcaacccttgatttatgatactcttgaatacgcttggaacttgtcagctgctatgtgt
cctgacggtcttataggtatctcaggtaatacactgaggatatttacaatcccaaagctt
ggtgaaaagcttaaacaagatattctccctctttcgtacacacctcgtaaattcgttagt
cacccatacaacactgtcttctacatgattgaatcagatcaccgaacgtatgctccttcc
acgatacagaggatcataggggagaaagaagcgagcgggaacagagtggacaaatctgta
cttgaattaccggcaaatgagtttggtagacccagagcgggagcgggtcattgggcttcg
ctgttgcgagtgttggatcctttgaataacgaatcccttgcgactttcgatctggatgaa
gatgaagctgcgttctcgattgccatagcttactttgagcgaggcggaggtgaacctttc
ttggtcgttggtaccggtgtgaagaccacactcacccccaagggatgtcaagaaggctgg
ctgcgagtgtatgcgataaaggagcaaggaagggtgttggagttcatgcacaagacgaag
accgatgatgtaccactttgcctagctgctttccagggcttcctgcttgctggtataggg
aaatcattgagattgtatgagatgggtaagaaggcattattgcggaaatgcgagaacaac
agcttcccaactggtgtagcaaccataaatgtccaaggcgcacgaattattgttggagac
atgcaagaatcaacattctactgtgtgtatcgatctgtgccaacgcgacaattgttggtc
ttcgccgacgacactcaaccaagatggttgacatgtgtgacagaagtagattatgagacc
atcgtttgtggagataaatttggaaatattttcttgaatcgattagatcaacgggtgtcc
gagaacgtggatgatgatcccacaggagcgaccatcttgcacgaaaaaagtttcttgatg
ggagcagctcacaagactgaactattagcacattataacgttggaagtatcgtcacttca
ataaccaaagtacctttagtagctggaggaagagatgttttggtttatactaccatctca
ggtactgtaggagccttaataccgtttgtctctgtcgatgacgttgagttcatgtctact
ttagaattgcatatgagatcacacaacgtttcattggtcggacgtgatcatcttgcttat
agaggatattacgttcctgtcaaaggagtgatagatggtgatttgtgcgaaaatttcaac
ttattaccttatagtaaacaacaagccatagcggcagatctggacgaaagaagtgttggc
gatgtcttaaagaaattagaacaaatgagaacgagtagtgctttctag

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