KEGG   Kwoniella shivajii: 87952570
Entry
87952570          CDS       T10982                                 
Symbol
IL334_000439
Name
(RefSeq) uncharacterized protein
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
ksh  Kwoniella shivajii
Pathway
ksh03018  RNA degradation
ksh03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ksh00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    87952570 (IL334_000439)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    87952570 (IL334_000439)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ksh03019]
    87952570 (IL334_000439)
   03041 Spliceosome [BR:ksh03041]
    87952570 (IL334_000439)
Messenger RNA biogenesis [BR:ksh03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     87952570 (IL334_000439)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     87952570 (IL334_000439)
Spliceosome [BR:ksh03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    87952570 (IL334_000439)
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 87952570
NCBI-ProteinID: XP_062788274
UniProt: A0ABZ1CP68
LinkDB
Position
1:complement(join(1172109..1172131,1172221..1172307,1172526..1172597,1172785..1172917,1173029..1173040))
AA seq 108 aa
MSGRGGRGGSRGGANNAQSGDRKKRESILNLAQYVDQSVRVKFMGGREVIGILKGYDQLM
NLVMDDVVEEYENNTLQPRNLGLVVLRGPNIVLISPTDGSAEIENPFA
NT seq 327 nt   +upstreamnt  +downstreamnt
atgtcaggacgaggcggccgaggcggttctcgcggaggagccaacaacgctcaatcaggc
gataggaaaaagagagaatccatattgaacttggctcaatatgtagatcaaagtgttcga
gtaaaattcatgggtggaagagaagtcataggcatattgaaaggttatgatcaattaatg
aatttagtgatggatgatgtagtagaagaatacgagaacaacacattacaacctcgtaat
ttaggcttagtagttctcagaggacctaatatagttttgatatctcctacagacggatca
gcagaaatcgaaaaccctttcgcatag

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