Kwoniella shivajii: 87952969
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Entry
87952969 CDS
T10982
Symbol
IL334_000838
Name
(RefSeq) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
ksh Kwoniella shivajii
Pathway
ksh03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ksh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
87952969 (IL334_000838)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ksh03400
]
87952969 (IL334_000838)
Enzymes [BR:
ksh01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
87952969 (IL334_000838)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
87952969 (IL334_000838)
DNA repair and recombination proteins [BR:
ksh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
87952969 (IL334_000838)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
NFACT_N
Motif
Other DBs
NCBI-GeneID:
87952969
NCBI-ProteinID:
XP_062788652
LinkDB
All DBs
Position
1:join(2230651..2230666,2230721..2230836,2230908..2230960,2231024..2231162,2231231..2231241,2231303..2231370,2231439..2231626,2231684..2231697,2231757..2232033,2232099..2232263,2232334..2232474,2232620..2232814)
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AA seq
460 aa
AA seq
DB search
MPELPEVERARKLIQETCRGYKIKSVDSVEDKIVYTGGDDHSAFAKEITGRTITGCERKG
KTFWMTLAGKGRLPVMHFGMTGMIQLKGQEPTWYRRRPKENSNNWPPKFHKFVLKLEPQE
GSVGDEPVELAFLDGRRLGRLRLLPSPVTSHPPVSALGFDPVLSHPSFEEFQELIAKKKG
TVKGMIMDQAFSAGVGNWVADEVLYQARIHPSCPVNHLSSQNIKDLHYQLRAVPLKAVEV
NADSRQFPEDWLFRWRWGKGKKQAKGKKKAEDAEGSDGEGGEDTKPPGKDFLALPNGKPA
TIVYVEVGGRTTAVVEELQKMPEGVEIKPKISKGGKGSQSKKRPKGDDSDNGSSGLSSEE
EVTTPVKATTARQRGSASKKVKSEVKTEIEDGPLRKSQKVSKGTTPSSGRKANGNGNSKP
VKKEPTSITKPRGSRGKATKIDLDGEDSSGLSDAPSENEL
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacttcctgaagttgaaagagctcgaaagctcatccaggagacatgtagagga
tacaagattaaatcggtagattcggtagaagataagatcgtatatacaggaggagatgat
cacagcgcatttgccaaggaaattacaggacgaactataacaggttgcgagaggaagggc
aagacattctggatgacacttgctggtaaaggaagattaccagtcatgcactttggtatg
acaggtatgatccagttgaaaggtcaagaacctacatggtacagaagaagacctaaagaa
aactcaaataattggccgccaaaatttcataaatttgtacttaaacttgaacctcaagaa
ggatcagtaggcgatgaacctgtagaattagctttcctagatggaagaagacttggacga
ttgagacttctaccttctcccgtcacttcacatccaccagtatcagctctgggatttgat
ccagtcctctcacatccttcgttcgaagagttccaagaactaatagcgaagaaaaagggg
acggtgaagggtatgattatggatcaagcctttagtgcaggagtaggaaattgggtagca
gatgaagtactttatcaagctcgtatacacccgtcatgtcctgtcaaccacttatcatct
cagaacattaaagatcttcattatcagttacgagcggtacctttaaaggctgtagaagtt
aatgctgactctcgacaatttcctgaagattggttattccgttggagatggggaaaggga
aagaaacaagctaaaggtaaaaagaaggctgaagatgcggaaggaagtgatggtgaaggt
ggagaagataccaaacctcctggaaaagattttcttgctttgcctaatggtaaacctgca
acaattgtatatgtcgaagttggaggtagaacaacagcggtagtggaagaattgcagaag
atgcctgaaggcgtagagatcaaaccgaagataagtaaaggtgggaaaggtagtcaaagt
aaaaagcgaccaaaaggagatgattcagacaatggatcgagtggtctttcatcggaagaa
gaagtaactacgcctgtaaaagctactacagctagacagaggggttcagcaagtaaaaag
gtcaaatctgaggttaagacagaaatagaggacgggccactgcgcaagtctcaaaaggta
tcgaagggaaccactccatcttctggtcgaaaagccaatgggaatggaaactcaaaacct
gtcaaaaaagaacctacttctatcaccaaaccccgaggatcgcgagggaaggctaccaaa
atagatttggatggagaggattcgtcaggtttatccgatgcgccttctgagaatgaactg
tga
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