Kwoniella shivajii: 87953237
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Entry
87953237 CDS
T10982
Symbol
IL334_001106
Name
(RefSeq) uncharacterized protein
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
ksh Kwoniella shivajii
Pathway
ksh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ksh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
87953237 (IL334_001106)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ksh03041
]
87953237 (IL334_001106)
Enzymes [BR:
ksh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
87953237 (IL334_001106)
Spliceosome [BR:
ksh03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
87953237 (IL334_001106)
Complex C
U4/U6.U5 tri-SnRNP related factors
87953237 (IL334_001106)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_N
DEAD
HA2_C
AAA_22
AAA_19
PWI
AAA_30
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
87953237
NCBI-ProteinID:
XP_062788917
LinkDB
All DBs
Position
1:complement(join(2996004..2996116,2996198..2996384,2996458..2996793,2996859..2997661,2997720..2997822,2997874..2998319,2998378..2999596,2999653..2999691))
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AA seq
1081 aa
AA seq
DB search
MDIKTYISDNVVRVLGSSDNATVDYVHSLALSSKTPGDLYHALLTTGLSDSADTQEFATQ
VHALIPRKTKPKVSKPEKVAASQKFALLMDEDAGASSSGSSSRKEKKSKKGKEKERETEK
DGGAVKHSRSARKRDTEGNWESDEEEKEKEAKRLRLLSPPRTGDGEEDGDDEPRIEETEE
ERLERERREDLAERDAFAERMKEKDKDRTKKLVTDRSTKSVGGLEAEKRSALADDAVARK
AAIEDLRLHSRQEYLTKREQQRLDLLKMEIEDEKILFRNQKMSRREEEEFERKKELIKIM
EARQRIDDGTDGYMMPDDYITEQGKIDQKKRKNALYQRYEDSKPVEGQFITDVDQWEASQ
TDHSSLRTGALDKEILVEEFDYVFDETQEIKFLQEGNLEGTLTAEAQAILDQVDQLEKKA
QSIQETRNSLPIYEFRDELLEAIAEHQVLVVVAETGSGKTTQLPQYLYEAGYCKNGMKVG
CTQPRRVAAMSVAARVAEEMGCRLGQEVGYSIRFEDMTSDKTALKYMTDGMLLREFLTDP
ELSTYSALVIDEAHERTLSTDILFGLIKDIARFRPELRLLISSATLNAQKFADFFDQAPI
FDVPGRRYPVDMFYTKQPEANYMHAAVTTILQIHTTQPKGDILLFLTGQDEIEAAEENLK
ETMYALGDKVPELIIAPIYANLPSEMQSKIFEPTPEGARKVVLATNIAETSITIDGVVYV
IDPGFVKQNNYNPKTGMSSLVVEPISRASAQQRAGRAGRVGAGKAFRLYTKWAFKNELLQ
DTIPEIQRTNLGTVVLMLKSLGINDVLNFDFLDKPPAETIIRSFELLYALGALNHKGELT
RLGRRMAEFPVDPMLSKAIINSENFKVTHEVLTIISMLQESGSLLYRPKDKRVHADKAHK
NFIKTGGDHFTLLNIFEQWVESNYSQQWCHENFIQFKSLGRVRDIRDQLAQLCDRVEVVI
ESTPNEVVPVQKALTAGYFYNTARIDKGGGYRTTKNNHSVYVHPSSCLLGMQPPPRFILY
YELVLTSKEYMRQCMPIEGSWLAELAPHYFNKNEIDQMLGSASKVKMPKAIDQPKVGPVN
P
NT seq
3246 nt
NT seq
+upstream
nt +downstream
nt
atggacatcaaaacatatatcagtgacaatgttgtccgggttctcggctcgtcggataac
gcaacagtcgattatgttcattccttggcgttgtcatcgaaaactcctggtgatctctat
catgcccttttaacaactggtctttccgattctgccgacacgcaggagtttgccactcag
gtgcatgctttgatacctcgaaagacgaaaccaaaagtctccaaacctgaaaaagtggcc
gcgtcacagaagttcgcattattgatggacgaagatgcaggtgcttcttcctcgggtagc
tcgagtcggaaagagaagaaatccaagaaaggaaaggaaaaagagagggagacggaaaag
gatggaggagccgtaaaacacagtcgttcggccagaaagcgggatacagagggaaattgg
gaatcagacgaagaagaaaaggagaaagaagccaaaagattacgattactttctccacca
cgaactggagatggagaagaggacggcgatgatgaacctcggatagaagaaacagaagaa
gagagattggaaagagaacgcagagaagatttggcggaaagagatgcttttgccgaaaga
atgaaagagaaagataaagataggacaaagaaactggttactgatagatcaacgaaatct
gttggtggattagaagccgagaaaagatctgctctagcagatgatgcagtagctagaaaa
gctgccatagaagatctgcgtctacattcgagacaagaatatctcacgaaaagagaacaa
caaaggttggatttgctcaaaatggaaattgaagatgagaaaatcttgttccgtaatcag
aaaatgtccagacgggaagaagaagaatttgaacgtaagaaagaattaatcaagatcatg
gaagcaagacaaagaatagatgatgggacagatggatatatgatgcctgatgattacatt
actgaacaaggtaaaatcgatcaaaagaaaaggaaaaatgctttataccaaagatacgaa
gatagtaaacctgttgaaggtcaattcataacagatgtagatcagtgggaagcgagtcaa
acggatcattcaagtctaaggactggtgctttggataaggaaatattagtggaagaattc
gattatgtctttgatgaaactcaggaaatcaaattcttacaagaaggtaatttggaaggt
actttaacagcagaagctcaggctatattagatcaagtagatcaattggagaaaaaagct
caaagcatacaggaaacaagaaattctctacccatttacgaatttcgagatgaactttta
gaagcaatagcagaacatcaagttcttgtcgttgtagctgagaccggttcaggtaaaacc
actcaacttcctcagtatctctatgaagctggatactgcaagaatgggatgaaagtcggt
tgtacacaacctcgtcgagtggcagcaatgtcagtcgctgctcgtgtggctgaagaaatg
ggttgcagactgggtcaagaagttggatattcaatcaggttcgaagatatgacaagtgat
aaaacagctttaaaatacatgacagatggtatgttgttgagagaattcttaacggatccc
gaattatcgacgtattctgctttggtcattgatgaggcgcatgagagaactttgagtacg
gatattctgtttggtctgatcaaggatatcgcccggttccgaccagaattacgattacta
atttcgagtgctactttgaatgcgcagaagttcgcagatttctttgaccaagcaccgatc
ttcgatgtgcccggtcgaagatacccagtcgacatgttttacaccaagcaacctgaagca
aactacatgcacgctgccgtcacgaccattcttcaaatccataccactcaacccaaaggc
gatatcctgctgttcttgactggtcaagacgaaatcgaagcagctgaagagaacctgaaa
gagacgatgtatgctcttggagataaagtacctgaactcataatcgcacccatttacgcc
aatttaccgagtgaaatgcagtcgaaaatctttgagcccacgccagaaggcgcgagaaag
gtcgtcttggctacgaatattgctgagacatccatcaccatcgacggtgtagtctatgtc
attgatcctggtttcgtgaaacagaacaactataaccccaaaactggaatgtcgtccttg
gtcgttgagcctatatcaagagcttctgcacagcaaagagcaggtagggcaggacgagta
ggagctggtaaagcgttcaggctgtacaccaaatgggctttcaaaaatgaattacttcaa
gatactataccagaaatccaaaggacaaatcttggtaccgtcgtattgatgctcaaatca
ctgggtataaatgatgtactcaatttcgatttcctggataaacccccagcagaaactatc
atcagatcgttcgaactgctttatgcgctaggagctttaaatcataaaggtgaactcaca
agattaggtagaagaatggcagaattccctgtggatcccatgttatccaaggccatcatc
aacagtgagaatttcaaggttactcatgaggttttgacgataatttcgatgttacaagaa
tcagggtcattactatatcgtccgaaagataaacgagttcatgccgacaaagcacataaa
aatttcattaaaacaggtggtgaccatttcaccctattaaacatatttgaacaatgggta
gaaagtaattactcccaacaatggtgtcatgagaatttcatccaatttaaatcacttggt
agggtgagagatatcagggatcaattagcacaattatgcgatcgtgtagaagtagtaata
gaaagtacgccaaatgaggtcgttccggtacaaaaagccctcactgcaggatatttctat
aatacggcacgaatcgataaaggagggggttatagaactactaagaataatcattcagtc
tatgttcacccttcgtcttgtttacttggaatgcaacctccgccacgattcatcctctac
tacgagctggtactgacttccaaggaatacatgaggcaatgtatgccgatcgagggatct
tggttagctgaacttgctccccattatttcaataaaaacgaaattgatcaaatgctagga
agcgcaagtaaagtgaaaatgccaaaagccattgatcaacctaaagtcggaccggtaaat
ccttaa
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