KEGG   Kwoniella shivajii: 87953238
Entry
87953238          CDS       T10982                                 
Symbol
IL334_001107
Name
(RefSeq) uncharacterized protein
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
ksh  Kwoniella shivajii
Pathway
ksh03040  Spliceosome
ksh04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:ksh00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    87953238 (IL334_001107)
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    87953238 (IL334_001107)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ksh03041]
    87953238 (IL334_001107)
   04121 Ubiquitin system [BR:ksh04121]
    87953238 (IL334_001107)
   03400 DNA repair and recombination proteins [BR:ksh03400]
    87953238 (IL334_001107)
Enzymes [BR:ksh01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     87953238 (IL334_001107)
Spliceosome [BR:ksh03041]
 Complex B
  Other components
   Prp19 complex
    87953238 (IL334_001107)
 Complex C
   Prp19-CDC5 complex
    87953238 (IL334_001107)
Ubiquitin system [BR:ksh04121]
 Ubiquitin ligases (E3)
  U-box type E3
   87953238 (IL334_001107)
DNA repair and recombination proteins [BR:ksh03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    87953238 (IL334_001107)
SSDB
Motif
Pfam: WD40_Prp19 Beta-prop_WDR5 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40 Beta-prop_IFT122_1st Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_WDR3_2nd WD40_Gbeta Beta-prop_WDR36-Utp21_2nd WD40_MABP1-WDR62_2nd EIF3I WDR55 Beta-prop_NOL10_N Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_1st ANAPC4_WD40 Beta-prop_SCAP Beta-prop_EML WD40_MABP1-WDR62_1st Beta-prop_CAF1B_HIR1 DSE1_N Beta-prop_EIPR1 Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_WDR41 Beta-prop_VPS8 Beta-prop_Aladin Beta-prop_SPT8 Beta-prop_Vps41 CFAP251_N WDR90_beta-prop_4th WD40_RFWD3 Beta-prop_DCAF4 NBCH_WD40 Beta-prop_WDR19_1st U-box TRM82_WD Beta-prop_DCAF12 Beta-prop_IFT140_1st WD40_like zf-Nse Arena_nucleocap
Other DBs
NCBI-GeneID: 87953238
NCBI-ProteinID: XP_062788918
UniProt: A0ABZ1CR07
LinkDB
Position
1:join(3000147..3000162,3000232..3000315,3000377..3000445,3000505..3000634,3000691..3000777,3000837..3000980,3001038..3002034)
AA seq 508 aa
MFFCAISGSPPTAPVVSKTSGTVYEKALIERYIEENGTDPISGEPLTKEDLIDVKAKPST
LPPRPANQTSIPALLTALQSEYDAIMLESLEIKKAFQSSRQELANALYREDAATRVIARL
MKERDEARQALSSIQSTIGFQPAATEAPAEDVEMAPEAAEGALPSEVEAKIMETNQALSS
GRKKRKPAAGYFKADQIKTFVQTSHVPSLHATKPAGITALDVAKDGNTVVTGGADKVVQI
FDLESSKVLGTLKGHTKAVTHVAFREKEGESKLAISASADKTVKIWGEEDGKWSNKSNIT
GHKGEITGLSLHPTGDFVSAASSDSTWSLYDLETSKEISKYTSIENISGGFSYTSFQCHP
DGILHGGGTKDGIVRVWDIRQASSLAASLESHSTPLTTLSFSENGYYLATGSSNDPTVKI
FDLRKLDILSSWSLPSENTISEVKFDPSAQFLSVSGTDLRVYANKSWDELLKFEDNAGVL
TGARFVNNGSQIVLSGLDRTLRVLGVQS
NT seq 1527 nt   +upstreamnt  +downstreamnt
atgttcttctgtgctatttcgggttcccctcctaccgctcctgtcgtctcaaagacttca
ggtactgtttacgaaaaagccttgatcgagaggtatatcgaggaaaatggaactgatcca
atctctggtgaacctctaaccaaggaagatcttattgatgtcaaagccaaaccatctact
ttacctcctcgtccggccaaccaaacatccatacctgcgttacttaccgcgcttcaatcc
gaatatgatgccataatgcttgaatcattagagattaagaaggctttccaaagttctaga
caagaacttgccaacgcattgtacagagaggatgctgctactagagtgatcgctagactg
atgaaagagagagatgaagctagacaagctttatcttccattcaatctaccattggtttc
caacccgctgctaccgaggctcctgctgaagatgtggagatggctcctgaggctgctgaa
ggtgctctcccttctgaagttgaagctaaaattatggagaccaatcaagctctgtcttct
ggaagaaagaagaggaagcctgctgccggctatttcaaggccgatcaaatcaagacattt
gttcaaacgtctcacgttccttcattacacgctaccaaaccggctggaatcacagcttta
gacgtggctaaagatggcaatactgtagtcaccggtggagctgataaagtggttcaaata
ttcgatcttgaatcttcaaaggtacttggaacacttaaaggacacaccaaagctgtcact
cacgtcgcattcagagagaaggaaggtgaatctaaattggcgattagtgcaagtgcggat
aaaactgtcaagatctggggcgaagaagatggaaaatggtcaaataaatctaatataaca
ggacataaaggtgaaattacaggtttgtcattacatcctactggcgatttcgtctctgca
gcttcatcagattcgacttggtcattatatgatttggaaacatcaaaagaaatttcaaaa
tatacttcaatcgaaaacatctctggtggattctcatacacatcattccaatgtcatcca
gatggaatcttacatggtggtggaacgaaagatggtatagtcagagtatgggatattaga
caagcttcgtctttagctgcaagcttagaatctcattcaacacctttaaccactttatct
ttctctgaaaacggttactatttagccactggttcttcaaatgatccaactgtcaaaata
ttcgatttgagaaaattagacatcttgtcaagttggtcattaccttctgaaaatacaatt
tcagaagtcaaattcgatccttcagctcaattcttatccgtttcaggaacagatcttaga
gtatacgcaaataaatcttgggatgagttactcaaattcgaagataacgctggtgtttta
acaggtgcaagattcgttaataacggaagtcaaatcgtccttagtggtttagatagaaca
ttgagagttttgggcgttcaatcttaa

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