Kwoniella shivajii: 87954147
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Entry
87954147 CDS
T10982
Symbol
IL334_002016
Name
(RefSeq) uncharacterized protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
ksh Kwoniella shivajii
Pathway
ksh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ksh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
87954147 (IL334_002016)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ksh03041
]
87954147 (IL334_002016)
Spliceosome [BR:
ksh03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
87954147 (IL334_002016)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WD40_Gbeta
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
WDR55
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_1st
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
PRP4
Beta-prop_DCAF4
Beta-prop_WDR36-Utp21_1st
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_Aladin
Beta-prop_WDR75_1st
Beta-prop_WDR41
WD40_like
NBCH_WD40
Beta-prop_SCAP
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_SPT8
Beta-prop_EIPR1
Beta-prop_Vps41
Beta-prop_IFT140_1st
Beta-prop_DCAF12
WD_LRWD1
Motif
Other DBs
NCBI-GeneID:
87954147
NCBI-ProteinID:
XP_062789814
LinkDB
All DBs
Position
2:join(1803079..1803097,1803164..1803348,1803483..1803602,1803666..1803739,1803804..1803897,1803997..1804274,1804352..1804564,1804640..1804747,1804815..1805370)
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AA seq
548 aa
AA seq
DB search
MDIDDLTVDNTYQLGGSDDERERAQNAALIEELDRKKRFRKMAVPTDDKKVKERLRAYGE
PITLFGEGPGDRRDRLKYIQEQIQQARGTDGMDVDDDSDESSDEEDEEGEFYTEGSDALL
EARRKLARYSLSKARTRIARQRVEVGLPLGKIVNLRKSVFSELKTFNNLGSQFGDDRPLS
TIRFSPNGQYILTSSWTGDSKIWDLPNLNLVSTKKGHTDKIGGSAWHPQATLGNSEDGLN
FATGGGEGTVKLWSLTGDKPLATLSGHENRVGRVAFHPSGSYLGSAGFDGTWRLWDVETH
QELLVQEGHSKEVYSLAFQDDGALVASGGFDAIGRVWDIRTGRTAMVLDGHVKEILAMDF
APNGYQVATGSGDDTVRIWDLRALKTQYIIPAHKSSVSDVKFFRSSNEISSISLNGNLPL
SGDVKGGVLDSTMEIDPDQDKEQDISEIGIETQEDEDVKPDTTSNGLTSNGGGNSIEQGE
LPKSGLFLVTAGFDCNVRIWSADEWSLIKNLPTDAGKVMSVDTSSDGKFIASASYSRSFH
LFGGDNSL
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atggacatcgatgatttgaccgttgacaatacctatcaattgggagggtcggatgatgag
agagaaagagctcaaaatgctgctctgatagaagagctagataggaagaagaggttcagg
aagatggcagttcctactgatgataagaaagttaaagagaggttgagagcttatggtgaa
cccattacactgttcggagaaggcccaggggataggagagatcggctgaaatatatacaa
gaacaaatacaacaagctagaggaacggatgggatggatgttgatgatgattcagatgaa
agtagtgacgaggaagatgaagagggagagttttatacagagggatcagatgcgttattg
gaggcgcgaaggaaattagctagatattcattatccaaagcgcgtacacgtatagcgaga
caaagggtggaagttggattaccgttaggtaaaattgttaatttgcgtaaatcagtgttc
tcagaattaaagacattcaacaatttgggatcacaatttggtgatgatagaccattatca
actataagattttcaccaaatggacaatatatcttaacttcatcttggacgggtgatagt
aaaatatgggatttaccaaatttaaatcttgtgtctaccaaaaagggtcatacggataag
ataggtggttcagcttggcatccacaagctacacttggtaattccgaagatggcttaaat
ttcgctactggtggtggagaaggcacggtgaaattatggtcattaactggtgataaacca
ctagcgacattatcaggacacgagaatcgtgtaggtagagtagcgttccatccatcaggt
tcatatttaggttcagcaggtttcgacggtacatggagattatgggatgttgaaacacat
caagaattattagtacaagaaggacatagtaaagaagtttattcactcgcatttcaggat
gacggtgctttggtcgcttctggtggattcgacgctattggaagagtgtgggatataaga
acgggtagaacagctatggttttagatggacatgtgaaagaaatcttagcaatggatttc
gcgcctaatggctatcaagtagcgacgggatcaggagatgacaccgtacgaatatgggat
ctaagagcgttgaaaacacaatatataattccagcacataaatcatctgtatcagatgtt
aagttcttcagatcgtcaaatgagatctcgtcaatatcattaaatggtaacctaccttta
tcaggtgatgttaaaggtggtgtacttgattctacgatggaaattgatccagatcaagat
aaagaacaagatatatcagagattgggatcgagactcaagaagatgaagatgtgaaacct
gatacgacctcgaacggattgacatcgaacggaggtggaaactcaattgaacaaggtgaa
ttaccaaaatcaggtttattcttggtgacagctggattcgattgtaatgttagaatatgg
tcagcggatgaatggtctttaatcaagaatttacctacagacgcaggtaaagtgatgagt
gtagatacaagttcagatggaaaattcatagcttctgctagttacagtaggagtttccat
ctgttcggtggtgataatagtttatag
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