Kwoniella shivajii: 87954175
Help
Entry
87954175 CDS
T10982
Symbol
IL334_002044
Name
(RefSeq) uncharacterized protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ksh Kwoniella shivajii
Pathway
ksh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ksh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
87954175 (IL334_002044)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ksh03019
]
87954175 (IL334_002044)
03041 Spliceosome [BR:
ksh03041
]
87954175 (IL334_002044)
03009 Ribosome biogenesis [BR:
ksh03009
]
87954175 (IL334_002044)
03016 Transfer RNA biogenesis [BR:
ksh03016
]
87954175 (IL334_002044)
Enzymes [BR:
ksh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
87954175 (IL334_002044)
Messenger RNA biogenesis [BR:
ksh03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
87954175 (IL334_002044)
Spliceosome [BR:
ksh03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
87954175 (IL334_002044)
Complex C
U4/U6.U5 tri-SnRNP related factors
87954175 (IL334_002044)
Ribosome biogenesis [BR:
ksh03009
]
Eukaryotic type
Pre-60S particles
Helicases
87954175 (IL334_002044)
Transfer RNA biogenesis [BR:
ksh03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
87954175 (IL334_002044)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
MTR4-like_stalk
DEAD
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
87954175
NCBI-ProteinID:
XP_062789842
LinkDB
All DBs
Position
2:join(1869472..1869870,1869931..1870185,1870252..1870456,1870505..1870858,1870914..1871353,1871422..1871686,1871755..1871996,1872056..1872415,1872469..1872834,1872892..1873092,1873156..1873329)
Genome browser
AA seq
1086 aa
AA seq
DB search
MAPKDPNGNSAAGPSTSRTKKQKKRNVKERSVDTSDRPIKSARLADDAEEEDEDKTGQAG
GDAVDMLDSGAGSSTNHQSPIDPMEALEGQGAIEGVTVLKADEFETEAEREVEASKGLDG
ASTEEGKMKLVHQVRHQVAVPPGFPYVPISQHKRLDPPAREYKFTLDPFQYVSTSCIERN
ESVLVSAHTSAGKTVVAEFAIATCLKEGRRVVYTSPIKALSNQKYREFLETFGDVGLMTG
DVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVVFDEVHYMRDKERGVVWEETIILLP
HSVRYVFLSATIPNSMEFAEWICSTHEQPCHVVYTDFRPTPLQHYLFPAGSEGIYLVVDE
RSNFREDNFQKAMAALAAGQGEDPSDPNSGRGKKGKTRKGGAMKGEKSDIYKIVTLIMRR
NLNPVIIFAFSKRECEDLAMQMQKFDFNTPDEASTVGQVFENAISGLSEDDRKLSQIEGI
LPLLKRGIGIHHGGLLPILKEVIEILFQEGLIKALFATETFSIGLNMPAKTVVFTSVRKF
DGKDFRNLSGGEYIQMSGRAGRRGLDARGIVIMMCDEKIEPDAAKGMVKGQADRLDSAFH
LGYNMIINLMRVEGVSPEFMLERCFFQFQNSMSVPVLEKQLKEAEEERDAIVVEKEDEIK
EYYDLRQQLKEKGQDFQAVISHPTYSLKFLQAGRLVEIKDGGKDFGWCVVVAYNKVVNAK
GRAPIFTESDPPQKQYVVDVLTRVASGTSSNPKDRSSSLLIPPPKGDQGEIAIIACSLIT
VQSISQYRINLPKDLRGQSEKNTAFKAVSEIKKRMPDGPPLLDPIKSMGIEDKSFKDLVK
KIAILEQRLSSLPITSSSSLPRLYDLYDNKQKSIEAVKSLKRRINSVHDILQLEELKARK
RVLRRLGFTTSDDVVEMKGRVACEISTGDELMLTEMMFGGTFGDLAPEHVAALLSCFVFQ
EKSEAKVRLKEDLAAPLRVLQETARRIAKISNESGIPLVEDEYVQSFKVEMMDAVLQWCK
GAKFSDICNLTDIFEGSIIRCFRRLQELIRQMGQAAHAIGNTELEEKFAKSMELLERPNT
VVFNPS
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atggcaccgaaagatcccaatgggaattcagctgctggaccatcaacgtctcggaccaaa
aagcaaaagaaacgaaatgtcaaagaacgtagcgttgatacctctgatcgcccgatcaaa
tcagctagattagcagacgacgccgaagaggaagatgaagataagactggacaagctggg
ggggatgctgtggacatgttggattcaggagctggatcatcaaccaatcatcaatctcct
atcgatccaatggaagctttagagggacaaggcgcaatcgaaggtgtcactgtgttaaaa
gcggatgaatttgaaactgaagccgagagagaagtagaagcttcgaaaggcttagacggt
gcgagtacagaagaaggtaaaatgaaactggtgcatcaggttcgacatcaagtcgctgtc
ccacctggattcccatacgtgcctatatcccaacacaaacgactcgatccacccgcaaga
gaatacaagttcactttggatcctttccaatacgtctctacatcgtgtatagagcgtaat
gaatcggttctggtatcagctcatacttcagctggtaagacagtggtagcagaatttgcc
attgcaacctgtttgaaggaagggagaagagttgtttacaccagtccaatcaaggcgttg
tcaaaccagaaatatcgagaatttttggaaacgtttggcgatgtgggattaatgacggga
gatgttactataaacccgacagcttcatgtcttgtcatgacgactgagattttgcgatcg
atgttgtatagaggatcggaagtgatgcgtgaagttgcttgggtcgtatttgacgaagtc
cattacatgcgtgataaagaacgaggtgttgtgtgggaagaaactatcatcctacttcct
cattccgtccgatacgtcttcctttcagctaccatccccaactccatggaattcgcagaa
tggatctgctcaacgcacgagcaaccatgtcatgtagtgtacacagacttccgtccgaca
ccgttacaacactacttgttcccagctggatcagaaggtatatatcttgtagtcgatgaa
aggagtaatttcagagaagacaatttccaaaaagcaatggcagctttagctgctggacaa
ggtgaagatccatctgatcccaatagtggaagaggtaaaaaaggtaaaactagaaaaggt
ggagctatgaaaggtgaaaagtctgatatatacaaaatcgtcacgttaattatgagaagg
aatctcaacccagtcatcattttcgctttttcaaaaagagaatgtgaagatttagccatg
caaatgcaaaaattcgatttcaacacaccagatgaagcttctaccgtaggtcaagtattc
gaaaatgccattagtgggttatcagaggatgataggaaactatcacaaatcgaaggaata
ttacctttattaaaaagaggtattggaattcatcatggtggtttattaccgattttgaaa
gaagtgatcgagattttattccaagaagggttaattaaagctttattcgcgactgaaact
ttctcaattggattgaatatgcctgcgaaaactgtggtcttcacttcggtaaggaagttt
gatggtaaagatttcaggaatctatcgggtggtgaatacatccaaatgtcgggaagagct
ggaagaagaggtttggatgctagaggaatagttatcatgatgtgtgatgagaaaatcgaa
cctgatgctgcaaaaggaatggtcaagggacaagcggataggttagattcagctttccat
ttgggctacaatatgatcatcaacttgatgagggtggaaggcgtcagtccagaattcatg
ttggaaaggtgtttcttccaatttcaaaattcgatgagtgtgcctgttttagagaagcaa
ctgaaagaagcggaggaagagagagatgcgattgtggtcgaaaaagaggatgagattaaa
gaatactatgatcttcgtcagcaactgaaagaaaaagggcaagacttccaagctgttatc
tcacatcctacatatagtttgaagttcttgcaagctggacgattggttgagatcaaagat
ggcggtaaagactttggatggtgtgtggtcgtggcatataacaaagtggtcaatgcgaag
ggccgagcaccgatatttactgaatccgatccaccccaaaaacaatacgttgtagacgtt
ctcactcgcgtagcatcaggaacatcgtcaaatccaaaagatcgatcttcatcactcctc
atcccaccaccaaaaggagatcaaggtgaaatagcaattatagcctgttcattgatcacc
gttcaatccatttctcaatacaggatcaacttgccaaaagacttgagagggcagtcggag
aagaacactgctttcaaagctgtctccgaaatcaaaaagaggatgcctgacggtccacct
ttgttagatccgatcaagagcatgggcatcgaagataagagtttcaaggatcttgtcaag
aaaatcgcaatcctagaacaacgtctttcatctctccctatcacctcatcgtcctcatta
cctcgtctatacgatctatacgataacaaacagaaatctatcgaagctgtcaaatcactc
aaacgaaggatcaactccgttcatgacatcttgcagcttgaagaactgaaagcgcgtaag
agggttttgaggagattaggattcaccacttcagacgacgtcgtcgagatgaaaggaaga
gtcgcatgtgaaatctcgactggtgacgaactcatgttgactgaaatgatgttcggtggc
acttttggtgatttggctcctgaacatgttgctgctttactaagttgcttcgtgttccaa
gagaagtccgaagcgaaagtacggttgaaggaagatctagctgccccactaagggttcta
caggaaacagcaaggaggatagctaagatatcgaacgaatcgggtatacctcttgtcgaa
gatgaatatgtccaaagcttcaaggtagaaatgatggatgctgtgttgcaatggtgtaaa
ggagccaaattcagtgatatctgcaatttgacggacatattcgaaggatcgatcatcaga
tgtttcagacgattacaagagctgataagacagatgggtcaagcagcacacgcgataggt
aatactgaattggaagagaaattcgccaaatcaatggaattactggaaagacccaataca
gtggtattcaatccttcgtaa
DBGET
integrated database retrieval system
