Kwoniella shivajii: 87954183
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Entry
87954183 CDS
T10982
Symbol
IL334_002052
Name
(RefSeq) uncharacterized protein
KO
K11600
exosome complex component RRP41
Organism
ksh Kwoniella shivajii
Pathway
ksh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ksh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
87954183 (IL334_002052)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ksh03019
]
87954183 (IL334_002052)
Messenger RNA biogenesis [BR:
ksh03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
87954183 (IL334_002052)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
87954183 (IL334_002052)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
DUF6703
Motif
Other DBs
NCBI-GeneID:
87954183
NCBI-ProteinID:
XP_062789850
LinkDB
All DBs
Position
2:join(1891639..1891675,1891740..1891986,1892155..1892270,1892363..1892730)
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AA seq
255 aa
AA seq
DB search
MSSSRLEILNDGGLRHDARRPYELRSTSFELSTHPSAEGSSTVTQGLTTVQVSIFGPREP
RQRSNASHDRAILSVEVGVVPWAQGAGGKRVRGDKRLQEIGASIRQTFEPVIMTHLYPRS
EIAIDVQVLSADGGILPTSINAVTLALISAGISLLDYVTSISIGLHLTQPLLDLSQPEES
DLPNMVVASLPTSGKITLAQMETRLHVDRFEEMLNLGVEACKVLKNEMELVVKDKTRKIV
DRMEIKSGAAMIVDE
NT seq
768 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcatctcgactagagatattaaacgatgggggactgagacacgatgccagaaga
ccgtatgaactccgatctacttcattcgaactctccactcatccatcagctgaaggaagc
tcaacagtcactcaaggattgacgactgtacaagtatcgatatttggacctagggagccg
aggcaacgaagtaatgcatctcatgatagagctattctaagtgtcgaagtcggagtggta
ccctgggctcaaggtgcgggcggtaaaagggttagaggagataaacgtctacaagaaatc
ggagcttcgataagacaaactttcgaacctgtgataatgacacatttatatccacgaagt
gaaatagctattgatgttcaagtattatctgctgatggcggtatattgcccacatcaata
aacgctgttacgttagcattgatttcagctggtatatcattattagattatgttacatca
atttcaattgggttacatctaactcaacctctacttgatctctcacaacctgaagaaagt
gatttacctaatatggtagtagcttcattacccacttcaggtaaaatcactttagctcaa
atggaaactaggttacacgtggataggttcgaagagatgttgaatttaggcgtagaagct
tgtaaagtattgaaaaatgaaatggaattagtagtaaaagataagaccaggaagatcgtt
gataggatggaaatcaaaagtggtgcagcgatgattgtcgatgagtag
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