Kwoniella shivajii: 87954622
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Entry
87954622 CDS
T10982
Symbol
IL334_002491
Name
(RefSeq) endoribonuclease YSH1
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
ksh Kwoniella shivajii
Pathway
ksh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ksh00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
87954622 (IL334_002491)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ksh03021
]
87954622 (IL334_002491)
03019 Messenger RNA biogenesis [BR:
ksh03019
]
87954622 (IL334_002491)
Transcription machinery [BR:
ksh03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
87954622 (IL334_002491)
Messenger RNA biogenesis [BR:
ksh03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
87954622 (IL334_002491)
U7-dependent histone pre-mRNA processing factors
87954622 (IL334_002491)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
SelP_N
Motif
Other DBs
NCBI-GeneID:
87954622
NCBI-ProteinID:
XP_062790286
UniProt:
A0ABZ1CUV7
LinkDB
All DBs
Position
3:complement(join(753948..754094,754187..754434,754507..754648,754712..754966,755068..755364,755455..755885,755974..756311,756381..756472,756534..756579,756729..756994))
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AA seq
753 aa
AA seq
DB search
MHRHGRRQFRATAPTAPVQILSPAGDDEPLTITMLGAGQEVGRSCCVIEHRGKKIVCDAG
LHPAHPGLGSLPFIDEVDWSTVDAILVTHFHVDHAAALPYIMEKTNFKDGNGKVYMTHAT
KAIYGLTMMDTVRINDQNPDISGKLYDEADVQSSWQSTIAVDYHQDIVISGGLRFTPYHA
GHVLGASMFMIEIAGLKILYTGDYSREEDRHLVVAEIPPIKPDVMICESTFGVHTLPDRK
EKEEQFTTLVSNIVRRGGRCLMPIPSFGNGQELALLLDEYWNEHPELQSIPVYFASGLFQ
RGMRVYKTYVHTMNSNIRSRFARRDNPFDFKFVKWLKDPKRLQEHKGPCVVMASAQFMSF
GLSRELLEDWSSDSKNGVIVTGYSIEGTMARTLLSEPDHIESLKGGNIPRRLTVKEISFG
AHVDYAQNSKFIQEIGAQHIVLVHGEASQMGRLRAALRDTYATRGQEINIHTPRNCEPLV
LTFRQERVVKAIGSLATSRPIHGTPLKGLLVSKDFSYTLLDPKDLKDFTGLSTSTLVQKQ
SIPIGVDWSVVRWHLEGMYGEVEEGPDQEGRACFTIMNAVKVVQISEIVIEIQWSSNSSN
DMIADSVLAVLLGIDGSPATVKLTSTPHQHAHHDHSHSHTQPHTHSNGNPSENNGEFDRI
QMFLEAHFGDVIGPNVTVNEGEEDELLVMTVRVDNLIAKVDLISMRVESDNVEMKRRVEN
VLEMALTTLQPLSRSFLGSGIDLNLEKTESIAA
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atgcatcgtcatggtagaagacagttcagagctaccgctcctacggctccggttcaaatc
ctttctccggcaggagacgatgagccattaacgataacgatgttgggtgcaggccaagaa
gtagggagatcatgctgcgttatagaacatcgagggaagaagattgtttgcgatgcaggt
ttacatcctgctcatccaggtcttggtagtttaccttttatagatgaggtggattggtct
actgttgatgctatactagttacccactttcatgtggaccatgcggccgctttaccatat
ataatggagaagaccaacttcaaagatgggaatgggaaagtatacatgacccatgccacc
aaagccatttacggtttaacgatgatggatacagttagaatcaatgaccagaatcccgat
atatcaggaaaattatatgatgaagcagacgtacaatcatcttggcaatccacaatagca
gttgattatcatcaagatatagtgatatccggtggattaagattcacaccttatcatgca
ggtcatgtattaggtgcatcaatgttcatgattgaaattgcaggattaaagatattatac
acaggagattattcaagagaagaagatagacatttagtagtagctgaaataccacctata
aaaccagatgtcatgatttgcgaaagtacttttggtgtacatactttacctgatcgaaaa
gaaaaagaagagcaatttactaccttggtatcgaatatcgttcgacgtggtggaagatgt
ttaatgccaattccatcatttggtaatggacaggaattagctttgttattagatgaatat
tggaatgaacatcccgaattacaatctataccagtttatttcgcttcaggtttatttcaa
agaggtatgagagtgtataaaacttatgttcatacaatgaactctaatatcagatcaaga
ttcgctagaagagataatccattcgatttcaaatttgttaaatggttgaaagatccaaag
aggttgcaagaacataaaggtccttgtgtggttatggcttctgctcaattcatgtctttt
ggtttatcaagagaattattagaagattggtcaagtgatagtaaaaatggtgtaatcgtt
actggttactcaattgaaggtactatggctagaactcttttatctgaaccagatcatatc
gaatcgttaaaaggaggaaacattcctcgtcgattgactgtaaaagaaatttcatttggt
gcacatgtggattacgcacaaaactccaagtttatacaagagatcggcgctcaacatatc
gtcttggtacatggagaagcttctcaaatgggtagattgagagctgctttgagagataca
tatgctacaagaggtcaagagatcaatattcacactccaaggaattgcgaaccattagta
ttgactttcagacaggaaagagttgtcaaggcaatcggatcgttagctaccagcagacca
atacatggaactccacttaaaggtttactagtctcgaaagacttttcatatacgctatta
gatccaaaagacctgaaagattttactggtttatcaacgagtacattggtacagaagcaa
tcgatacctataggagtagattggagtgttgttagatggcacttggaaggcatgtatggt
gaagtcgaagaaggtccagatcaagagggaagagcgtgtttcacgataatgaacgccgtc
aaggtcgtacaaatatctgagatagtaattgagattcaatggtcttcaaactcaagtaat
gatatgatagcagattctgttctagctgttttattaggtatagatggaagtccagctacc
gtgaaattgacatcaacaccccaccaacatgctcatcacgatcattcccactctcacact
caaccgcatacccatagtaatggcaatccaagtgaaaacaatggagagttcgatcggata
cagatgttcctggaagctcattttggtgatgtgattggacctaatgttactgtcaacgaa
ggagaagaagatgagttgctagttatgacagtaagagtggataacttgattgctaaagtt
gatctgatctcaatgcgagtcgaatcggacaatgtggaaatgaaacgacgagttgaaaat
gtattggaaatggctttgaccacgctgcaacctttatcaagatctttcctaggctcaggt
atagatctgaatctggaaaaaaccgagtctatcgcagcgtag
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integrated database retrieval system
