Kwoniella shivajii: 87954924
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Entry
87954924 CDS
T10982
Symbol
IL334_002793
Name
(RefSeq) uncharacterized protein
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ksh Kwoniella shivajii
Pathway
ksh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ksh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
87954924 (IL334_002793)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ksh03019
]
87954924 (IL334_002793)
Messenger RNA biogenesis [BR:
ksh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
87954924 (IL334_002793)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
87954924 (IL334_002793)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
DUF3819
CNOT1_TTP_bind
ARM_Cnot1
CNOT1_HEAT
NOT1_connector
Acetyltransf_11
Motif
Other DBs
NCBI-GeneID:
87954924
NCBI-ProteinID:
XP_062790582
LinkDB
All DBs
Position
3:complement(join(1624649..1624983,1625050..1626595,1626650..1629598,1629653..1630438,1630494..1631483,1631560..1631829))
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AA seq
2291 aa
AA seq
DB search
MSIPPPGLGGGVSRTGPPPGFGGGNVGVVTHSPASDASGNISNANGSAGGGGGRRDGQGG
PAAIIRAQISFLLTTFTEDTFDKMSNEIRTLASSNGPEMYHHFLRRAAVVANPIIQTLIQ
HSQQYKDDPAAPPPQLPTSGQAALVWRLLVTEAIRAARDVQLAPHFSFIMLSPAQSPLPL
PSLRLFNLPPALLFSLSAYTLASPHVFPPSHASFPVFHAILSQTFQPTMELLRSPGVPFW
TITSIPGREPYSEESTHDLTLQEARTLILALFPRSQSSSGGNPTSRPATPTNPTSPHSSP
LNSMQRQTLLGSLTVKFSSPAIILQTLSALSPGGPPRTQGSIPLEDMLFELGENLTQDEG
TVEAVVGRWWGPYLLEGISPEEQQNQITEETCQVIHGLCEGLRMGRLVDPHGVIRGMSAI
PFISWPDVVRSFDSPLTIAAYQTSISLIVNLIQLPPQTPIPPLAGLLPASLNAPTWENMS
SLLSVLSLLTILPPDAMPIFTMATAPSPSSYARIVDPPSSDSQWSKVARQQANDLQGAGL
WNTLGLIQVLVNACGLAETDHPSEREREERADIGRRATDMLESAAKLAPELVLLALEKLP
VSLTLFDTADKQKPLPPSVANMHTRLLAVYLSSAPTAITSSALVFHQMWQTSPEGLLSVL
LEFYSEDENNLGRIVEIATELKVLDILLASENLHFTLDVAALASNKELLNLEKWLADGIE
VKGGEFLEAIFDFVEHKIRLEIDHQHVPESAPPLLFTLGTNVYSIFIRVVRNASDLSRED
VARFKHLRTDILILHPRLLNLLPGSKAEQGFTEAKFPKEIVDKVDEMYQQMYSGQLKLDD
VIEELKRCQKSDDPMDRDTFAHALHSLFDEYKFVKSYPAKELTMTGLLFGAIIDYRLVKD
TSAFVATRYVLDACKTPPQEALYQFGINALSILRNSLVDFPGLCRSLLEIPALHESHPVL
INDIHQALIEREELDMQGGVKLAFPALRLPILIEEGDDEFREPEPKKKDAFMFIINQIAP
SNYESKAQELTHLFENQYSRWFAHYFIDVRVSLEMNRHDIYMQIIDALRSPVFEKHVLWE
TYRKARDLLNSEATMNSASERTTLKTVASWLGKITLARNKPIKLRELSLKDLLIQGFDTK
RLIVAIPFVCNLILSCKDSVVFHTPNPWLMAILRLLAEFYHFAELRLNLKFEIEVLFSKL
GVELESIEPSNQLRLHVPPPPPQEELPNRLDLELQRATSDIMNGGQRFAELPGNENYARI
QQIQTEQAAQAAQDAMTRRVDELIAQLPQYLIFNQDYPIFTAPTLKRIVHHSIDRAIREI
IGPVIERSVTIAGISSRDLIQKDFGMEGDAVKMRSAAHMMVQNLAGSLALVTCKEPLRTS
MIGNIKQMLEQNGYTEDSMPDAMIAGVVNQNLDVACSVLKKAAQEKAAKDIDVNLAPQYA
ARKAHQNSRSPTPFWDGASFGFTLSHNALPDPLRLRPGGLTPQQFRVYEDFGEPTRMISH
PTPPTNGDYLVSQYRDLNLHDGLVPSEIKRGPSPRGAFNNQNIMEPPESVASPQPIPPQT
SVDKFHELAAEIEKLLAQAPVTNISALPADHEIRALIRGVVIVANQSVHRDSTTLTIGQK
VVQLLYRSTAQLAREVYVYLLQQLCDLSPKVSREVKQWLVYAEDPRKFNVPVTVTLIRAQ
SISVHELDAALAQVIVRAYTPEVIDFVAQLIRECSISDNAFIPRNGFANSLAALLKAQEI
GRVTPAADALLDELRGGSVRSPAVPTPDAKPSIDTKLQERLSHYFLEWVRVFSTSKNPEV
AFVPYITYLQKEGILNGEDVSSAFYRTAINTAVDLDTAKLQQGLFYGTDALAKLIVLIVK
NYGDKSGTSSVSRTVYYYNKIITIMSYSLVQKQLELGDAFNQRPWARFFTSMLSELQSVE
YALPEIYLGCLKHFANNLGITQPTYAPRFAFGWISIVSHRLFMPKLLQTARDDGWPEYHR
CVMWLLRFLSPFLQSGEMTPSSRSIFKATIKLLVILMHDFPEFLVEFYHTLSTAIPPHCV
QMRNIILAAFPQNEGPLPDPYKRLDQLVPEMQRFPTVRSDYIGALTDGNLKGAIDQFVRT
GVPALPAIVAELKNRIAVKSIGQDGNTTVTWNHTLLHAAVFYLGTTAVARRFSQTGVVDF
DAKAPEVGVLTGLSHAFDAEGQYYILSVIADQLRYPSAHTSFFIHFILFLFGTSARQEPP
SVIPERIARVLLERTLVQRPHPWGLLVTFIELLDNDAYGFWKQPFVRAEEEVYRLFGQVR
GSVVARRELQA
NT seq
6876 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatccctcctcccggtctgggaggcggggtcagtaggaccggtccaccaccgggt
ttcggaggtgggaatgtcggtgtggtaacgcattcaccggcaagcgatgccagtgggaat
atatcaaatgcaaatggtagcgctggaggaggtgggggaagaagagatggacaaggtggt
ccagcagctatcatcagagctcaaatctcattcttgttaacgacgtttacagaagatacg
tttgataaaatgtctaatgagatcagaacccttgcatcgtccaatggacctgaaatgtat
catcactttctcagacgagcagcagtcgtggccaacccaatcatccaaacactcatacag
cattctcaacaatataaagatgatccagcggctcctcctcctcaactccctacatcaggt
caagcggctctcgtttggcgtcttcttgtcactgaagctataagagcagctagagacgtt
caactcgcacctcatttctcattcatcatgttgtccccagcgcaatcacctcttcctctt
ccttcccttagattgttcaacctaccaccagcactactattctctctctctgcatacaca
ctcgcatcgccccatgtattccctccctctcatgcatcgttcccggtatttcatgctata
ctatcacaaacattccaacctacgatggaattgctccgatctcccggtgtccctttttgg
accatcacatctatcccgggaagagaaccatactccgaagaatcaacccatgatttgaca
ttacaagaagcgagaactctgattttagcattattccctcgttcccaatcatcctcaggc
ggaaatccgacatctcgacccgctacccctacaaatcccacttcacctcattcttctccg
ctcaattcgatgcaacgtcagactcttcttggatcgcttacagtgaaattttcttctccc
gctatcatacttcaaactctttcagctttgtctccaggtggaccaccaagaactcaagga
tccattcccttggaagacatgttgttcgagctaggcgagaatcttactcaggacgaggga
actgtagaagctgtcgtaggaaggtggtggggtccttacctattggagggaatatcacct
gaagagcaacaaaatcaaatcacggaggagacatgtcaggtaattcatggtttatgtgag
ggtctaaggatgggtcgtttagtggatccacatggagtcattagaggaatgtcagcaatc
ccattcatatcttggcctgatgtagtccgctcgtttgattctcccctcaccatcgccgca
tatcaaacatctatttctcttatcgtcaacctgatacaactcccacctcaaacacctata
ccacctctcgctggacttttgcccgcttccctcaacgctccgacgtgggagaatatgtca
tctctcctttcagtcctgtctcttttaacgattctccctcctgacgctatgcctatattc
acaatggcaaccgcgccttccccttcatcttacgctcgtatcgttgatcctccttcgtcc
gactcacagtggagcaaggtagctagacagcaagcaaacgaccttcaaggtgctggtctc
tggaacacattagggttaatacaagtcctcgtcaacgcttgtggccttgcagagactgat
catccatcggagagagaaagggaagaaagagcagacataggacgaagggcaactgatatg
ttggaaagtgcagctaaattggctccggaattagtcttgcttgctttggaaaaacttcct
gtgagtctcactctgtttgacacagctgacaagcagaaacctctcccgccctccgttgcc
aacatgcacactcgtctgcttgcagtctacttgtcatcagctccaactgcgatcacttcc
tcggctcttgtgttccaccagatgtggcaaacgagccctgaaggactactttcagtgtta
ttggagttctacagtgaggacgagaacaacttgggacgtattgttgaaatcgctacggag
ctcaaggttcttgacattctacttgcatccgaaaaccttcacttcacgcttgacgtagct
gctctcgcttccaacaaggagctcttgaatctggagaaatggctcgcagacggtatcgaa
gtcaaaggtggagaatttctagaagccatttttgatttcgtggagcacaagatcagactg
gaaattgatcatcaacatgtcccagagtctgctcctcccctcctattcacccttggcacc
aacgtttactccatcttcatacgtgtggtccgtaatgcgtctgatctttctcgtgaggat
gttgctcgatttaaacacctccgtacggatattctcattttacatcctcgtcttctcaat
ctcctacctggcagcaaagcagaacaaggtttcaccgaggccaaatttcccaaagaaatc
gtggacaaggtggatgaaatgtaccagcaaatgtacagcggtcaactcaaattggatgat
gtaattgaggagctcaaacgatgtcaaaaatccgatgacccaatggatcgagatactttt
gctcatgccctccactcacttttcgacgaatacaagtttgttaaatcatatccggcaaag
gaacttaccatgactggtcttttgtttggtgcgattatcgattaccgtcttgtcaaagat
acctcggctttcgtggccactcgatacgtgctcgacgcttgcaagactccccctcaagaa
gccttatatcaatttggtatcaatgcactgagcatcttgcgaaactcactggtcgacttt
cctggtctttgtcgatctttacttgaaattcctgcccttcacgaatcacatcctgtactc
atcaatgatatacaccaggcgttgatcgaaagagaagaacttgatatgcaagggggcgtc
aaactcgctttccctgctcttcgattaccgattttgatcgaagaaggtgatgacgagttt
agagaacctgaaccaaaaaagaaggatgctttcatgttcatcatcaatcaaatcgctccc
agtaactacgagtccaaagcgcaagagcttactcatcttttcgaaaatcaatactcccga
tggttcgctcattactttatcgatgtgcgggtcagtctcgaaatgaaccggcatgacatc
tacatgcagattatcgacgctcttagatcgcctgtcttcgagaaacatgttctttgggaa
acataccgaaaggccagagatttgctcaactccgaagcaacaatgaactctgcttctgaa
aggacaacactcaaaacagtcgcaagctggttaggtaagatcactctggcaaggaacaaa
cccatcaaattgcgcgaactgtcactcaaggaccttttgatacaaggattcgacaccaaa
cgactcattgtagctattccctttgtctgtaacctcattctttcttgcaaagactcggtt
gtcttccacacgccaaacccttggctcatggctatcctccgattacttgcggaattctac
cacttcgcagaattgcgtctcaatctcaaattcgagattgaagtcctcttcagtaaactg
ggagttgaattagaatcgatcgaaccttccaaccagcttcgattgcacgtacctcctcca
ccacctcaagaagaactacccaaccgactagatctcgaacttcaacgggctacaagcgat
attatgaatggtggtcaacgatttgcagaacttccaggtaacgaaaactacgctcgaatt
cagcaaatacagactgaacaagccgctcaagctgcccaagatgcgatgacccgacgagtc
gatgagctcatcgctcaattgcctcaatacctcattttcaaccaggactacccaattttc
accgctcctactctcaagcgaattgttcatcattccatcgaccgggctatcagggaaatc
attggtcctgtcatcgaacgatccgtcactatagcaggtatctcttcccgtgatctcatt
caaaaggacttcggtatggaaggggatgcggtcaagatgcgatccgctgctcacatgatg
gtgcaaaacctggcgggcagtctcgctcttgtcacttgcaaggagcccctccgaactagt
atgattggcaatatcaagcagatgctggaacagaatggttataccgaggattctatgcct
gatgcgatgatcgcgggagttgtcaaccagaatttggatgtcgcttgttcggtactcaaa
aaggctgctcaagagaaagctgccaaagacattgatgtcaatctcgcacctcagtatgcc
gctcgaaaagcccatcagaattcacgatctccaactccgttttgggatggtgcatctttc
ggtttcactctttctcacaacgctcttcctgatccactcagacttcgaccaggtggtctc
actcctcaacagttcagagtatatgaagatttcggtgaacctacaagaatgatcagtcac
cctactccaccaaccaatggtgactacctcgtatcccagtatagagatcttaacctgcat
gacggacttgtgccttcggagatcaaacgtgggccttctcctcgaggtgcattcaacaac
caaaatatcatggaacctcctgaatctgttgcttcgcctcaacctattccacctcaaaca
agcgttgataagtttcatgagctcgctgcggagattgaaaaattactggctcaagctcct
gtaaccaacatttctgcccttcctgccgatcatgagattagagctctcattagaggagta
gtcattgtcgccaaccagtccgtgcatagagattccaccactcttactattggccaaaaa
gttgtacaattactttacagatcgacagctcaactggctagagaagtttacgtctacctc
cttcaacagctttgcgatctttcgcccaaggtcagtagggaggtgaaacaatggttggtc
tatgccgaggatccacggaaattcaacgttccagtcaccgtcaccctcattcgagctcaa
tctatcagcgtacacgaactcgatgctgctttggcacaagtcattgttcgagcatacact
cccgaagtcatcgattttgttgctcaactcatcagggaatgttctatctctgacaacgca
tttatcccaaggaacgggttcgccaacagtttggctgctctactcaaagcgcaggaaatt
ggtcgagtcactcctgcggccgatgctcttctcgatgagctacgtggtggatctgtcaga
tctcccgctgttcctactcccgacgccaagccatctattgatactaagcttcaagagaga
ctctcgcactacttccttgagtgggtacgggttttcagcactagcaagaatccagaagtc
gcctttgtaccatacatcacttatctccaaaaggaaggtattctcaacggtgaagacgtt
tcttctgcgttttacagaacagctatcaacacagctgttgatctagatactgccaagctc
caacaaggccttttctacggtacagatgctttagctaaactcatcgttttgatcgtcaag
aattacggtgacaagagtggaactagtagtgtctcaagaactgtatactactataacaag
ataatcactatcatgtcatactcgctcgttcagaaacaactggaattgggagatgcgttc
aatcaacgaccttgggcaagatttttcactagcatgttgagcgaactccaatctgttgag
tacgctttacccgagatttaccttggatgtttgaaacatttcgccaataaccttggaatc
actcaacccacctatgcaccccgattcgcctttggatggatctcaattgtatctcatcga
ttgttcatgcccaaattacttcaaactgcacgagatgatggatggccggagtatcatcga
tgtgtgatgtggttactaagattcttatctccatttttacaatctggcgaaatgacccct
tcatcaaggtcgatcttcaaggctacgatcaagttgctcgtcatcttgatgcacgatttc
cctgaattccttgtcgagttctatcacacgttgtcaactgccatcccacctcattgtgtc
cagatgagaaatataatactagcagctttccctcaaaacgaaggtcctctgcctgaccca
tacaaaaggctggatcaactcgttccagaaatgcaaagattcccaactgttcgatcggat
tacatcggcgctttaacagatggtaaccttaaaggagcgatagatcaattcgtacgaact
ggtgtaccagctttacctgctatagtagctgaactcaagaatagaatagcagtcaaatcg
attggccaagatggaaataccactgtcacttggaatcatacattacttcacgccgctgtg
ttttatctgggtacaactgctgttgcaagaagattctctcagactggggtagtcgacttt
gatgccaaagcacctgaagtgggagttctgaccggtctatcacatgctttcgatgctgaa
ggacaatactatatcctcagcgtcattgcagatcagttgagatacccttcagcacacaca
tctttcttcatccatttcatcttgttcctctttggaacgtcagcaagacaggagccacct
tccgtcattcctgaaaggattgcaagggtacttctcgagagaactctcgtacaaagaccc
cacccttggggattgttggtcacctttatcgaattgctcgacaatgatgcatatggattt
tggaaacaacctttcgtcagagctgaggaagaagtgtatcgacttttcggtcaagtcagg
ggtagtgtagttgccagaagggagttgcaagcttga
DBGET
integrated database retrieval system
