Kwoniella shivajii: 87955308
Help
Entry
87955308 CDS
T10982
Symbol
IL334_003177
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
ksh Kwoniella shivajii
Pathway
ksh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ksh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
87955308 (IL334_003177)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ksh03041
]
87955308 (IL334_003177)
Spliceosome [BR:
ksh03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
87955308 (IL334_003177)
Complex C
U5 SnRNP specific factors
87955308 (IL334_003177)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
PRO8NT
U6-snRNA_bdg
U5_2-snRNA_bdg
RRM_4
PROCT
GIIM
Motif
Other DBs
NCBI-GeneID:
87955308
NCBI-ProteinID:
XP_062790964
LinkDB
All DBs
Position
4:join(523909..524124,524211..524366,524437..527922,527998..528615,528730..528850,529024..529091,529154..529207,529265..529326,529382..529425,529487..530457,530643..530853,530914..531923,531993..532061)
Genome browser
AA seq
2361 aa
AA seq
DB search
MSAPPGFGTMPPPGLPAASQPNGESRMDGDFFGQLSQDEIEKKARKWRQSQKKRFDPKRR
QGGGGGIDFGKADLPPEHIRKIIKDHGDMSNRKFRNDKRVHLGALKYVPHAVMKLLENIP
MPWEQVREVPVLYHISGAITFVNEVPQVIEPVYHAQWASMWLAMRREKRDRRHFKRMRFP
PFDDEEPPMDYGDNVLDVEPLEAIQLELDEEDDEAILDWFYDPKPLLDTPHVNGSSYKYF
QLSLPQLANLYRIGRQLLSDYSDNNAFYLFDKKSFFTAKSLNIALPGGPKFEPLYRDTEA
FDEDWNEFNDINKVIIRGVIRSEYKVAFPHLYNSVPRSVHIGAYHEPKNVYIKTDDPDLP
AFYFDPLINPISQRVVQEAHTPLVSHEDSVFGLGNEEDEDFELPDELEPFLENRDISNDN
TADAIALFWAPYPYNLRSGKTKRAQDIPLIKNFYLEHCPPDQPVKIRVSYQKLLKVYVLN
ALHHRRPKAMAKRNLFRSLKNTKFFQSTNLDWVEAGLQVCRQGYNMLNLLIHRKNLNYLH
LDYNLNLKPIKTLTTKERKKSRFGNAFHLCREILRLTKLIVDAHVQFRLGNVDAFQLADG
LQYMFAHVGQLTGMYRYKYKLMKQIRMCKDLKHLIYSRFNTGPVGKGPGVGFWAPGWRVW
LFFMRGIVPLLERWLGNLLARQFEGRNSKGMAKTVTKQRVESHFDLELRASVMHDLLDMM
PESIKANKAKTILQHLSEAWRCWKANIPWKVPGMPAPIENIILRYIKSKADWYSSVAHYN
RERIRRGATVDKAVVRKNLGRLTRLYLKAEQERQNGYLKDGPYISSEEAVAIYTSTVHWL
ESRKFAPIPFPPLSYKHDTKLLVLALEKLKEAYSVHGRLNQSQREELALVEQAYDNPHEC
LSRIKRLLLTQRAFKEAGIEFFDTYDKLIPCYDIEPVEKITDAYLDQFLWYEADKRGLFP
NWIKPSDNEPPPLLVYKWCQGINNLTDIWDTTDGECVVMMETVFSRVYEKVDFTLLNRLL
RLILDHNLADYITAKNNIALTFKDMSHINAYGMIRGLQFSSFVFQFYGLVLDLLILGLQR
ASELAGPPGAPNGFLQFRDSDTETRHPIRFYTRYVDRIHILFRFSSDEARDLIQRYLSAN
PDPNNENMHNYNNKRCWPKDCRMRLNKHDVNLGRAVWWNVKSSLPRSLTTIEWDESFVSV
YSKDNPQLLFSMSGFEVRILPRIRTQHGEQYSLKDGVWNLTQESTKERTAQAFLRVSDRG
VNDFNNRIRQVLMSSGSATFSKVINKWNTALIGLMTYYREAVVHTNELLDSLVKAENKVQ
TRVKVGLNSKMPSRFPPCVFYSPKELGGLGMLSMGFVLIPQSDLRWSKQTDSGGITHFRS
GMTHEEDQLIPNLYRYLQPWEAEFLDSARVWSEYAMKRKEATASNRRLTLEDLEDSWDRG
IPRVNTLFQKDRHTLAYDKGWRVRQFFSMYFRLRNQPFIWTNNRHDGKLWNLNSYRVDVI
AALGGVEGILEHSLFKGTAFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLSQIPNRRFT
LWWSPTINRANVYVGFQVQLDLTGCFMHGKLPTLKISFIQLFRAHLWQKIHESVTMDLCQ
VFDQELEALQIETVQKETIHPRKSYKMNSSASDILLFSSYKWQISRPSLLTDNRDTFDGT
TSNKFWLDIQLRWGDFDSHDIERYARAKFLDYSSDSQSIYPSPTGVLIALDLAYNLYSAY
GNYFPGLKPLLQQAMAKIMKANPALYVLRERIRKGLQLYSSEPTEPYLNSSNYSELFSNQ
IIWFVDDTNVYRVTVHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQ
LAKWKTAEEVAALVRSLPVEEQPKQVIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQA
TLKMEKFGDLILRANQPQMVLFNLYDDWLKSISSYTAFSRLILILRALHVNNEKSKIILR
PDKATITESYHIWPTLSDDAWMSVEVALKDLILADFGKRNSVNVASLTASEIRDIILGME
IAAPSVQRQQMAEIEKTTEAQSQVTALQTKTTNIHGDEIVVTTTTNYEQQTFASKSDWRV
RAISATNLPLRVNHIFVGNDDVRDDAGSFTYVIPKNVLKTFIVNGDLRTQVVAYLYGTSP
PDNPQVKEIKAVAWVPQRGSNNGVELPAALPKHDFLLKDLEPLGWIKTQSQELNHLSPAD
VTTQAKIMANHSEWGPQSICVTCAFTPGSVSLNAWELTVAGFEWGRKNQDVTGQNPGFNP
AMANRVQLLLSDRILGMTLVPEGGVWNYGVGLTQSWSDKLPFSMTLDKPESFWAPCHRPN
AFLNFASMEGDDAADVENSLE
NT seq
7086 nt
NT seq
+upstream
nt +downstream
nt
atgtccgctccaccaggattcggtaccatgccgccgccaggattaccggctgcatctcaa
cccaatggagaaagtaggatggatggagatttctttggacagttaagtcaagatgagatt
gagaaaaaggcgagaaaatggagacaatctcaaaagaagaggtttgatccaaagagacga
caaggtggtggtggcggaatagattttggtaaagctgatttacctcctgagcatattcga
aagatcataaaggatcatggcgatatgtcaaataggaaattcagaaatgacaaacgtgta
catttaggagccttgaaatatgttcctcatgctgttatgaaattattggagaatattccg
atgccttgggagcaagtacgcgaagtgccggtgttgtatcatatctcaggtgctattaca
ttcgttaatgaagtgccacaagtgatcgagcctgtgtatcacgcccaatgggcatcgatg
tggcttgcgatgagaagagagaagagagatcgaaggcatttcaagcgaatgagattccct
ccttttgacgatgaagagccacctatggattatggagacaacgtgttagacgtggaacca
ttggaagctattcaattggaattagacgaggaagacgatgaggctatcttggattggttt
tatgatccaaaaccattactcgatacacctcacgtcaacggatcaagttataaatatttc
caattgtcattacctcaattagcgaacctatatcgaataggtcgccagctcctttcagat
tattcagataacaatgcgttctacttgtttgacaagaaaagtttcttcactgcaaaatct
ttgaacatagctttacctggtggacccaaatttgaaccattatatagggatacagaagca
ttcgatgaagattggaacgaatttaatgatatcaataaagtcatcattcgaggcgtcatt
cgttcagaatacaaagtcgcctttccacatctatataactcagttcctcgttcagtgcat
attggagcttatcatgaaccaaagaacgtgtatatcaaaacggatgatccggatttaccg
gcattctacttcgacccccttatcaatcctatctctcaacgtgttgtgcaggaagctcac
acaccattggtctcacatgaagactcagttttcggacttggaaatgaagaggatgaagac
tttgagttaccggatgaattggagccgttcttggagaacagggatatcagcaatgataat
accgcagatgcgatcgcattgttctgggcgccttatccgtacaatttgcgtagtggaaag
acgaagcgagctcaagatatacctttaatcaaaaacttttatctcgagcattgtcctcct
gatcaaccagtcaaaattagggtttcttatcaaaaactgctcaaagtttacgtcctcaat
gctctccaccatagaagacccaaggctatggcgaaacgtaatcttttcaggtcactcaag
aacacgaagttcttccaatcgactaatttggattgggttgaagctggtttgcaagtctgt
cgacagggttacaatatgcttaacctgttaattcaccgaaagaacctgaattacctgcat
ttagattataacttgaatttgaagcctattaaaactctcacaaccaaagaaaggaaaaag
tcaagatttggtaacgctttccatttgtgtcgagaaatcctccgattaaccaaactcatt
gtcgacgctcatgttcaattccgtttgggtaatgtggacgctttccaattggcggacggt
cttcaatacatgttcgcgcatgttggtcaacttaccggaatgtacaggtataaatacaaa
ttgatgaaacaaatccgaatgtgtaaagatctgaaacatcttatatactctcgattcaac
actggtcctgtcggtaaaggtccaggtgtaggtttctgggcgccaggatggagagtgtgg
ctattcttcatgagaggtatcgtacctttattggaaagatggcttggaaacttattggcg
agacaattcgaaggaagaaactcgaaaggtatggccaagactgtgacaaagcaaagagta
gaatcacatttcgatttggagttgagagcaagtgtcatgcacgatctcttggatatgatg
cctgaatccataaaggcaaacaaagcgaaaactatccttcaacatctttccgaggcatgg
cgatgctggaaagccaatattccatggaaggttcccggtatgcccgctcccatcgagaat
atcatattgcgatacatcaaatcgaaggccgattggtattcaagtgtagcgcactacaac
agagagagaatcaggagaggagccacagtcgacaaggctgttgtccgaaagaatcttggt
cgattgacacgactttacttgaaggcggagcaagaaaggcagaacggatatctgaaagat
ggtccatacatatcttcagaagaggctgtagctatctacacatcgactgtccattggtta
gagtcaagaaagttcgcccccatccccttccctcctctctcctataagcatgacaccaaa
ttgcttgtactcgcccttgaaaagcttaaagaagcatattcggtacacggaagactcaat
caatctcagcgagaagagcttgccttagtcgaacaagcatacgataatcctcacgagtgt
ttgtcccgaataaagcgattactcttaactcaaagagcgttcaaagaagctggtatcgaa
ttcttcgacacatacgacaagctcataccttgttacgatatcgaacccgtagagaagata
acagatgcctatctcgatcagttcttatggtacgaagccgataaacgaggattattccct
aactggatcaaaccatccgataacgaacctcctcctttacttgtatacaagtggtgtcaa
ggtatcaacaaccttaccgatatatgggatactaccgacggagaatgtgttgtaatgatg
gaaaccgtattttctcgtgtatacgagaaagtagatttcacactattgaaccgattgttg
agattgattctagatcacaatttggcagattacattactgcgaagaacaacatcgcttta
actttcaaggatatgtctcacatcaacgcgtatggtatgattagaggtctacaattctct
tcgtttgtcttccaattctacggtttggtcctcgatttgcttattctcggtcttcaacga
gcgagtgaattagctggtccacctggtgcaccaaatggtttccttcaatttagggattct
gacacggaaactcgacatcctatccgattctatactcgatacgttgatcggatccacatt
ctcttccgattctcttccgatgaagctcgagatttgatccaacgatacctcagtgcaaat
cccgatcccaataacgagaacatgcacaattacaacaacaagcgatgctggcctaaagac
tgtcgaatgcgtctgaacaagcatgatgtcaatctaggtcgagcagtatggtggaatgtc
aaatcttccttacctagatctttgacaacgatcgaatgggacgaatcatttgtttccgtg
tattccaaagataaccctcaattgcttttctctatgtccggcttcgaagtccgaatcttg
ccaaggatccgtactcaacacggagaacaatactcgctgaaagatggcgtgtggaatttg
actcaagagtctaccaaagaaagaacggcacaggcgttccttcgtgtttccgaccgtggt
gtcaatgacttcaacaatagaatcagacaagtattgatgagttctggttcagcgactttc
tcaaaagtgataaacaaatggaacacggctcttattggtctgatgacatactaccgagaa
gctgtagttcacacaaatgaacttcttgattcgcttgtcaaggccgagaacaaggtacaa
acccgagtcaaagtggggttgaactccaagatgccttcgagattccctccttgtgtgttc
tactcgcccaaggaattaggtggtctgggaatgctttcaatgggtttcgttttgattcct
caatccgaccttcggtggtccaaacaaaccgatagtggtggtatcacccacttcagatct
ggtatgacccacgaagaagatcaactcatccctaatttgtatcgatacttgcaaccttgg
gaagcagagttcttggactccgctcgtgtgtggtccgaatacgccatgaagagaaaagaa
gctactgcatcaaacaggcgattaactttggaggatttggaagattcatgggatagaggt
attcctcgtgtgaacactcttttccagaaagatcgacatactcttgcatacgataaagga
tggcgtgttcgacagttcttctcaatgtacttcagattgaggaatcagccattcatatgg
acgaataacagacatgatggtaaattgtggaatttgaactcctaccgagtcgatgtcatc
gcagctttaggaggtgtagaaggtatcttagagcactcactcttcaagggcactgctttc
cctacttgggagggactgttttgggagaaagcatccggttttgaggaatccatgaagtac
aagaagctcaccaacgctcaaagatccggtttgagtcaaattcctaaccgtagattcacc
ctttggtggtcgccaacgatcaaccgagccaatgtttacgtcggtttccaagttcaatta
gatctcactggttgctttatgcacggaaaactgccaactttgaaaatatcattcatccag
ctcttccgagcccatttatggcagaagattcacgagtccgttaccatggatttatgtcaa
gtattcgatcaagaactcgaggccttacaaatcgagaccgtgcagaaagaaacgattcat
ccccgaaagtcatacaaaatgaactcttctgcttccgatattcttttattctcctcttac
aagtggcaaatctctcgaccatctttgcttaccgataaccgagataccttcgatggaact
acctcgaacaagttctggcttgatatccaactgcgatggggtgatttcgattcccatgat
atcgaacgatacgcacgagccaaattccttgactactcttctgacagtcaatcgatttac
ccttccccaactggtgttctcattgctcttgacttggcttataacctttactcggcatac
ggtaattacttccctggtctcaaaccattacttcaacaagcaatggccaagattatgaaa
gccaatcctgccttatacgtcttacgtgaacgtatcagaaaaggtcttcaattgtactct
tctgagcctactgaaccatacttgaattcttccaactactctgaattattctccaaccaa
atcatttggttcgtagatgataccaacgtttaccgagtgacagtccacaagacattcgaa
ggtaatttgacgaccaaaccgatcaatggtgccatcttcatctttaaccctagaacaggt
caactgttcttgaagattattcatacatcagtatgggccggtcaaaaacgtctgggtcaa
ttggcaaaatggaagaccgcagaagaagtagctgctttagtaagatccttgccagtcgaa
gagcaacctaaacaagtcatcgtcactagaaagggtatgttggatccattggaagttcat
ttactcgatttcccaaatatcgtaatcaagggttccgaacttcaattacctttccaagct
actttgaagatggagaaattcggagatttgatcttgcgtgctaaccaacctcaaatggtc
ttgttcaatttatacgatgactggctcaaatctatctcctcctacactgctttctcgcga
cttatccttattcttcgagctcttcacgtcaacaatgagaaatccaaaatcatccttcgt
cccgacaaggcaaccatcactgagtcgtatcacatctggccaacattgtcagatgacgct
tggatgtctgttgaagtcgctttgaaagacttgatcttggcagactttggaaagcgaaac
tcggtcaatgtagcttcgttgactgcttccgaaatcagggatatcattttgggtatggaa
atcgctgctccgtcagtacaacgtcaacaaatggcagaaattgaaaagactaccgaagct
caaagtcaagtcactgcccttcaaaccaagacgaccaacatccacggtgacgagattgtt
gtgacgaccactaccaactacgagcaacaaactttcgcttccaaatctgactggagagtt
agagctatctcagctaccaacttgcctctccgtgtcaaccatatcttcgttggaaacgat
gatgtcagagacgatgctggatccttcacctatgtcatacccaagaatgtcctcaagact
ttcattgtcaatggtgatcttcgaacacaagttgtcgcttatctttacggtacttcgcca
cctgacaacccacaagtcaaagagattaaagctgttgcttgggtacctcaaagaggtagt
aacaacggcgttgaacttcctgctgctctacctaagcacgatttcctgcttaaagatctc
gaacctcttggatggatcaagactcaatctcaagaactcaaccatctttctcctgccgac
gttaccactcaagccaaaattatggctaatcactcagaatggggacctcaatcgatttgt
gttacatgtgctttcacacccggttcagtatcgttgaacgcatgggaacttacggtagca
ggatttgaatggggaagaaagaatcaagatgtcacaggacagaatcctggattcaatcct
gcaatggctaacagagtacaattgctattgtctgatagaattttaggtatgactttagtt
ccagaaggtggtgtttggaattatggtgttggtttaactcaaagttggagcgacaaatta
ccattcagtatgactttggataaacccgaatccttctgggcaccatgtcacagacctaac
gcgttcctcaattttgcttcgatggaaggtgacgatgcggcggatgtcgagaacagttta
gaataa
DBGET
integrated database retrieval system
