Kwoniella shivajii: 87955458
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Entry
87955458 CDS
T10982
Symbol
IL334_003327
Name
(RefSeq) uncharacterized protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ksh Kwoniella shivajii
Pathway
ksh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ksh00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
87955458 (IL334_003327)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ksh03021
]
87955458 (IL334_003327)
03019 Messenger RNA biogenesis [BR:
ksh03019
]
87955458 (IL334_003327)
Transcription machinery [BR:
ksh03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
87955458 (IL334_003327)
Messenger RNA biogenesis [BR:
ksh03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
87955458 (IL334_003327)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pcf11_C
CID
zf_PCFS4
DUF7340
zf_UBZ
zf-Tbcl_FmdE
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
87955458
NCBI-ProteinID:
XP_062791112
UniProt:
A0ABZ1D1C8
LinkDB
All DBs
Position
4:join(945473..945742,945918..946930,946989..947163,947234..947497,947579..948058)
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AA seq
733 aa
AA seq
DB search
MSYQTYPPYQQLGSYYPPPQPQSQLHQQHLQPQPPHDPFRAYYADRLRQLTFNSRPIIQD
LSMMAGAQRDQNNWEGMNTVVQEIEAAVLRALPNQKLPLLYLIDSISKNIGPPYTTHLLP
PVIPRLYLRTYREVDGVTKAKMEEMINLWRSGGPNRTELYGIEVRESIEREIFGSSGVGG
GIGGGGLGGRNNLNVPLLPSLQQVKKTVQTALDNKQKEAASKAWDMATGQQVNALTGILN
LLNQTSVSPNELVQIMEQVKSIASSQPQPQPQPPLAQPVYSPPQSIQQPATPNWGAPIPN
TPSNIPHFPHAFPGNNGRQIPPQIRQNYVSNIPTPPQVNLNTPLPGSVTPVPAPNPVLPA
AISMPSIANLPIDVSKILNSLNKSGVVSQNRTPEPQAPPPPAPKSGLDSYEDMILSMNIS
LRSIDLNAIHVLSFDHLPHRCKQCGMRFAGDDSKFQAHMDWHFRRNRKEREAAGRGAHRR
WLPRAEEWINDTFASDNEPGPSSSTINNSPGKTSNTATVSAERLSQLRQKWVKVPQDSKK
ALAVCPVCKESFVKEWSEDDEEWIWKNALNINGTIYHATCRAEQLSAMRRLKGTDPNRRS
NSGSPRLTPQPEQDQAQIQVKSEMIAQANQALQANQVAVAQAKRKAEEEEDKTDEGAESK
RVKVEPESHEEDQTMAEDEKQEENVQDRVSEKVKDEREEVQEDKEEDAKPDPHDDVPELE
PKREVEMAVISAI
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgtcatatcagacttatcctccttatcaacaactgggctcctattaccctcctccccaa
ccccaatcccaactacatcaacaacatttacaaccccagccccctcatgaccctttccga
gcatattatgcagatcgattgagacagcttacattcaactctcgtccgattatccaggat
ctttcgatgatggctggagcacaacgagatcaaaataactgggaaggaatgaacactgtc
gttcaagagattgaagcggccgtgctcagggcactgccaaatcaaaaattacctttacta
tatttaatcgattctatttcgaaaaatattggtccaccttatacaactcatttgttacca
cctgtcatccctcgactttatttgaggacgtatagagaagttgatggtgtgaccaaagct
aaaatggaagaaatgatcaatctttggagatcaggtggacccaatagaactgaattatat
ggaatagaagttagagaatcgatcgaaagagaaattttcggttcgtcaggtgtaggtggt
ggtatcggcggtggtggattgggaggacgtaacaatttgaatgtacctttattacctagt
ttacaacaagttaaaaaaactgtacaaactgccttagataataaacaaaaagaagctgca
tcaaaagcatgggatatggccacaggtcaacaggtgaacgctttaactggtattttgaat
ttgttaaatcaaacaagtgtttctccaaacgagttggttcaaatcatggaacaagtaaaa
tcaatagcttcttctcaaccacaaccacaaccacaaccaccactagctcaacccgtatat
tcaccacctcaatcaatccaacaacctgctacaccaaattggggtgcgccgataccaaat
acaccgtcaaatatccctcatttccctcatgcattccctggtaacaacggtagacaaatt
cctcctcagattagacaaaattatgtgtccaacatacctactcctcctcaagtaaacctc
aatactcctctaccgggttccgttacacctgttccagcacccaaccctgtattgcctgct
gcgatttccatgccatcaatcgcgaatttgcccattgacgtttccaaaatactaaacagt
ctaaacaagtcaggtgttgtaagccaaaacagaactcctgaacctcaagcaccaccccct
ccagcgcctaaatccggtctagattcatacgaagatatgattctcagcatgaatatcagt
ctacggtctatcgacttgaacgctattcacgttttatcatttgaccatttacctcaccga
tgtaaacagtgtgggatgagatttgcgggtgatgattcgaaatttcaagctcatatggat
tggcatttcagacgtaataggaaagaacgcgaggcagctggtcggggtgcccacagacgt
tggttacctcgtgcagaagaatggataaacgatacatttgcatctgacaacgaacctgga
ccgtcttcatcgacgattaataattcacccggtaaaacttcaaatacagctacagtgtca
gcggagagattatctcaattgagacaaaaatgggtcaaagttccgcaagatagcaaaaag
gctttagccgtttgtccagtatgtaaagaatctttcgtgaaagaatggtcagaagatgat
gaagagtggatatggaagaatgctctgaatataaatggcaccatatatcatgcaacttgt
cgtgctgagcaattgtcagctatgaggagactgaaaggcacggatccaaatagacgaagt
aatagcggaagtccaagattgactccgcaacctgaacaagatcaagctcaaatccaagtc
aaatcggaaatgatcgctcaagctaatcaagccctccaagctaaccaagttgccgtcgca
caagcgaaaagaaaagctgaggaagaagaggacaagacggatgagggtgctgagagcaaa
agagtcaaagttgaacctgaatctcatgaagaggatcaaacgatggctgaagatgagaaa
caagaggagaacgtacaagatagagtatcggaaaaggtgaaagatgagagagaggaggtt
caagaagacaaagaggaagatgcgaaacctgatcctcatgatgatgtaccagagcttgag
ccgaagcgagaggttgaaatggcagtgatatcagctatctaa
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