Kwoniella shivajii: 87956024
Help
Entry
87956024 CDS
T10982
Symbol
IL334_003893
Name
(RefSeq) mRNA 3'-end-processing protein YTH1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
ksh Kwoniella shivajii
Pathway
ksh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ksh00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
87956024 (IL334_003893)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ksh03021
]
87956024 (IL334_003893)
03019 Messenger RNA biogenesis [BR:
ksh03019
]
87956024 (IL334_003893)
Transcription machinery [BR:
ksh03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
87956024 (IL334_003893)
Messenger RNA biogenesis [BR:
ksh03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
87956024 (IL334_003893)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Torus
zf-CCCH
zf-CCCH_4
zf_CCCH_4
zf-CCHC
zf-CCHC_2
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
87956024
NCBI-ProteinID:
XP_062791668
LinkDB
All DBs
Position
5:complement(join(389969..390052,390150..390537,390674..391121,391253..391394))
Genome browser
AA seq
353 aa
AA seq
DB search
MAAAASSTTPLDPHLGRAADFVRPDFHQVNLDIEGFLKREKGYKLDSDSQICPLSLTPLG
CPLPPSQCPYRHTVPSPANFTLPPPLPPHPREREKKLTVCKHYLRNLCKMGDNCEYTHDF
NLRTMPICIWFVKQGKCELGGECLYFHPRDRRVECPDYNRGFCVNGPECDKRHVRRRLCQ
AYQSGFCPDGKNCKLSHPSPNRPSPEEYVNPIPPDPKQFTGPPPQLPAGYGRWREYRYDP
NAVVVPAPAWVEGGSLSGWRAGGFLSSNARRGPGGGGGGGEDRDSGGSRGHDGGGRGGGG
GGGGGGPDGYEKKTGWVKDLSTVLCFRCNTYGHFANTCPNQAVPGDRGGLKKE
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgcggccagttcgacgacacccttagatcctcatttgggcagagcggcagat
tttgtcagaccagattttcatcaggtcaacttggacattgagggattcttaaagagagag
aaagggtataagcttgattcagattctcaaatatgtccattatcacttacaccactcgga
tgtcctctaccaccttcacaatgtccttatcgacatactgtaccttcacctgcaaacttc
acactaccaccgccccttccaccacatccaagagaaagagaaaagaaattaacagtgtgt
aaacattatctgagaaatttatgtaagatgggtgataattgtgaatatacacatgacttt
aatctaagaacaatgccaatctgcatatggtttgtcaaacaaggtaaatgtgaattaggt
ggtgaatgtttatattttcatccaagagatagaagagtcgaatgtccagattataatcgt
ggtttttgtgttaatggtccagaatgtgataaacgacatgtaagaagaagattatgtcaa
gcatatcaaagtgggttctgtccagatggtaagaactgtaaactgtctcatccctcaccg
aatcgtccttcacctgaagaatacgtcaacccaatcccacctgatcccaaacagttcact
ggtcctccaccacaattaccagcaggatacggccgatggcgagaatacagatatgatcct
aacgctgtggtggttcctgctcctgcttgggtagaaggtggttctttgagtggttggaga
gcaggtggattcttatcatcaaatgcacgtcgtgggcccggtggcggtggcggcggtggc
gaagatagagacagtggtggatcaagaggtcatgatggtggtggtcgtggtggcggtgga
ggagggggtggcgggggacccgatggatatgagaagaaaactggttgggtaaaagaccta
agtactgtgctttgtttcaggtgtaacacatacggtcatttcgcaaatacatgtcctaat
caagctgttccaggagatagaggtggattgaagaaagagtga
DBGET
integrated database retrieval system
