KEGG   Kwoniella shivajii: 87956244
Entry
87956244          CDS       T10982                                 
Symbol
IL334_004113
Name
(RefSeq) small nuclear ribonucleoprotein Sm D2
  KO
K11096  small nuclear ribonucleoprotein D2
Organism
ksh  Kwoniella shivajii
Pathway
ksh03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ksh00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    87956244 (IL334_004113)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ksh03041]
    87956244 (IL334_004113)
   03032 DNA replication proteins [BR:ksh03032]
    87956244 (IL334_004113)
Spliceosome [BR:ksh03041]
 Complex A
  U1 snRNP components
   Sm proteins
    87956244 (IL334_004113)
  U2 snRNP components
    87956244 (IL334_004113)
 Complex B
  U1 snRNP components
    87956244 (IL334_004113)
  U4/U6.U5 tri-snRNP components
    87956244 (IL334_004113)
 Complex C
  U2 snRNP components
    87956244 (IL334_004113)
DNA replication proteins [BR:ksh03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (fungi)
    Sm core complex
     87956244 (IL334_004113)
SSDB
Motif
Pfam: LSM Hfq Curto_V2
Other DBs
NCBI-GeneID: 87956244
NCBI-ProteinID: XP_062791887
UniProt: A0ABZ1CZF4
LinkDB
Position
5:complement(join(1005976..1005995,1006065..1006099,1006172..1006233,1006313..1006526,1006605..1006609))
AA seq 111 aa
MSQYAHVPKSELDEAQLRELEDYEISQGPLSVLQQAVRNSSQVLISLRNNKKLLARVKAF
DRHCNMVLENVKEMWTETPKGKGKKPVNKDRFISKMFLRGDSVILVLRNAA
NT seq 336 nt   +upstreamnt  +downstreamnt
atgagtcaatacgcccacgtgcccaagtccgagctcgacgaagcacagttacgagaattg
gaagattacgaaatatctcaaggacctctgtcagtcttacaacaagcagtgcgaaattca
tcacaagtgttgatctcattgaggaataacaaaaagctgttggcaagagtgaaagctttt
gatagacattgtaatatggtattggagaatgtgaaggagatgtggacagaaacaccaaaa
ggaaagggaaagaaacccgtgaacaaggatagattcatttcaaaaatgttcttgcgtgga
gattctgtcattctcgtacttcgaaacgcagcataa

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