Kwoniella shivajii: 87956344
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Entry
87956344 CDS
T10982
Symbol
IL334_004213
Name
(RefSeq) uncharacterized protein
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
ksh Kwoniella shivajii
Pathway
ksh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ksh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
87956344 (IL334_004213)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ksh03000
]
87956344 (IL334_004213)
03019 Messenger RNA biogenesis [BR:
ksh03019
]
87956344 (IL334_004213)
04121 Ubiquitin system [BR:
ksh04121
]
87956344 (IL334_004213)
Enzymes [BR:
ksh01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
87956344 (IL334_004213)
Transcription factors [BR:
ksh03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
87956344 (IL334_004213)
Messenger RNA biogenesis [BR:
ksh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
87956344 (IL334_004213)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
87956344 (IL334_004213)
Ubiquitin system [BR:
ksh04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
87956344 (IL334_004213)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
Motif
Other DBs
NCBI-GeneID:
87956344
NCBI-ProteinID:
XP_062791986
LinkDB
All DBs
Position
5:complement(join(1273453..1273469,1273529..1273783,1273864..1275180,1275231..1275352,1275412..1275779,1275834..1275984,1276043..1276152,1276216..1276296,1276461..1276634))
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AA seq
864 aa
AA seq
DB search
MAPPSLHPLPANPTTGQQPFATLGSRGISSVAPASGSSGGVNRETLKSLHDVYWSDDEDD
PDCLLCAEPLDLSDLNFKPCQCGMQICQFCYNKLLGTDARCPGCRRPYDAKAVVFQPVDW
EEVKRAKERKTKRTRTIKQLTTMGRRHLLGVRVVMKNMVYVIGMKLPAPGDDAIPILRSN
DYFGQYGKISKIYLSDRTKLSSSAVSTLTPDDPSTATGIYIVYIRREDAARAIASLDGIP
APQGPPGATLKATYGTTRYCEAFLRSQKCDTVNCHNLHEWGGDSDCFTKEDMETALIRPA
EYDARQKQTIVSAPQPPSLSSKTAWPKPSSEDVNNPSTGLPSAASWGKGITVKTTSRASS
ANPIARPTKIGNFVPLGKTNAAFPLPTPSPTIPIIIKEKKERKSTAMARGKSTDSSQSAT
TGSAQTSPKKKSSTLPPLSSTKPSSSTSAAPPPPPGLPVVSSTLALSSLSAAESVDDAID
EQASADSDAGPSSASPAPRTPSRDADEISPEPLSTEPIIIHSPYPEPVIFSFPAHDKDFA
FVLGLDESELQRRQAQAGGYEPSPFSKTLEGLAELGVHAPELPDLFDAPSRRGSLGYNGL
FRPFDTMEEDSPSTSDNTPGPSRLRQDDHNAQRTESRFGFARPISSASRGQSPFSSMRRS
VAEQSGLRDGWLSRDQPNEESLVQHQQYQQQQNDPRSAALTAQVASFIGSYDSSGAAESG
WAGDSAYSASPSHQRQLGMQGYERSERGRIDHGNLVQGGYLPKGLRSERDEYEPPVLQYG
STQIYSNPAHSQNQQRSLFSPDSTSHSIHEDNYQSPLAFSQLQAQQQQTPLQHQHHHPDA
RQLMAMHHSRGSPTPLAAHAYRRF
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atggcccctccttcgctgcaccctctaccagcaaatccaactactggacaacaacctttc
gcgactttaggctcaagaggtatcagttcagtggcgcctgcaagtggatcaagtggaggt
gtgaatagggagacgttgaaaagcttacacgacgtttactggagtgacgatgaggatgat
cccgattgtttactatgtgcggaacctctcgatctgtcagatctgaattttaaaccatgt
caatgtggtatgcagatctgtcagttttgctataacaagcttcttggcacagatgcacgt
tgtccgggatgtagaagaccgtatgatgctaaagcggttgtctttcaacctgtggattgg
gaagaggtcaaacgggcaaaggaaagaaagacgaaacggacaagaaccatcaaacagctc
actacgatgggaagacggcatctacttggggtcagagtcgtcatgaagaacatggtctat
gtcataggaatgaagctacctgcaccgggagatgatgcaatacccatcctgcggtcaaat
gattattttggtcaatatggtaaaatatccaaaatatacctcagcgatcgaacgaagctt
tcctcttcagctgtatcgaccctcacaccggatgacccatccactgcaacagggatatat
atcgtttacattcgtcgagaagatgccgctagagctatagcgtcattggatgggatacca
gctcctcaaggtccacctggagctacgttaaaggcaacatatggaacaaccagatactgc
gaagcattcctgagaagtcagaaatgtgacacggtcaactgtcacaatctgcatgaatgg
ggtggcgatagtgattgtttcaccaaggaagatatggaaactgccttgatcagaccggca
gaatatgacgctagacagaagcaaaccatcgtatcggcccctcagccaccttctctatct
tccaaaactgcttggccaaaaccatcctcggaggatgtcaacaatccttcaactggtcta
ccaagcgctgctagttggggtaaaggtatcactgtcaaaacaacctcacgtgccagcagt
gcgaatcctatcgctcggccgaccaagattggcaattttgtacctcttggaaaaaccaat
gctgcgttccccctccccacaccttcaccgaccatccccatcattatcaaagagaagaaa
gagagaaagtccacggctatggctcgaggaaagagtaccgactcatcacaaagcgctact
acaggtagcgctcagacctcgcccaagaagaaatcatctaccttacccccgctgtcttct
acaaaaccctcttcttcaacctcagcagcgccacctcctccgcctgggttacctgttgtg
tccagtacattagccctatcctcattatcagctgcggaatctgtagatgacgcaatagat
gagcaagcttcagcagattctgatgcaggaccatcttcagcttcacccgctcctcgaaca
ccttctcgagatgccgacgagatctcaccggagcctttatcaacggaaccaattatcatt
cactccccttaccccgaacccgtcatcttttccttccccgcacacgacaaagactttgct
ttcgtacttgggctggatgaatcggaattgcagagaaggcaagcacaagctggaggatac
gagcctagtcctttcagtaaaacattggaaggtttggcggagcttggtgttcatgctcct
gaactaccagacctgtttgacgcaccttcacgccgaggatctttaggatacaacgggttg
ttccgaccatttgacacaatggaagaggattcaccttcgacatcagataacacaccagga
ccttctcgtttgagacaagacgatcacaatgctcaacgaacggaatcaagattcggcttt
gctagaccaatatcaagtgcttcaagagggcaaagtcccttcagtagtatgagaagaagc
gtagctgagcaatctgggttaagggatggatggctttcccgtgatcagcccaacgaagaa
tcgttagttcagcaccaacaatatcaacaacaacagaatgaccccagatcggctgcactc
acggctcaagtagcgtcattcatcggaagttatgactcttcaggggcagctgaaagtgga
tgggcaggagattcagcttactcagcttccccatcgcaccaacgtcaactaggtatgcaa
ggttacgagagaagtgagagaggtagaatagatcacggtaatttagtacaaggtggttat
ctgccaaaaggactgagatcagaaagggatgagtatgaacctccggtactacaatacggt
tcaacccaaatctattctaatcccgctcattcccaaaatcaacaacgatcattattctca
cccgattctacatcacattccatccatgaagataactatcagtcaccacttgcattcagt
caacttcaagctcagcagcaacaaacacccttgcagcatcaacatcatcatcctgatgct
agacaattgatggcaatgcatcattcaagaggttcacctacccctcttgcagcgcacgct
tatcgacgcttttaa
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