Kwoniella shivajii: 87956452
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Entry
87956452 CDS
T10982
Symbol
IL334_004321
Name
(RefSeq) uncharacterized protein
KO
K12879
THO complex subunit 2
Organism
ksh Kwoniella shivajii
Pathway
ksh03013
Nucleocytoplasmic transport
ksh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ksh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
87956452 (IL334_004321)
09122 Translation
03013 Nucleocytoplasmic transport
87956452 (IL334_004321)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ksh03019
]
87956452 (IL334_004321)
03041 Spliceosome [BR:
ksh03041
]
87956452 (IL334_004321)
Messenger RNA biogenesis [BR:
ksh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
87956452 (IL334_004321)
Spliceosome [BR:
ksh03041
]
Complex C
Other components
EJC/TREX
87956452 (IL334_004321)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
87956452 (IL334_004321)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
THOC2_N
Tho2
Thoc2
Motif
Other DBs
NCBI-GeneID:
87956452
NCBI-ProteinID:
XP_062792090
LinkDB
All DBs
Position
5:join(1564935..1565417,1565492..1566073,1566133..1566228,1566290..1566997,1567040..1567586,1567640..1568106,1568169..1568659,1568712..1568995,1569079..1569536,1569619..1569806,1569863..1569926,1569982..1571947,1572020..1572168)
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AA seq
2160 aa
AA seq
DB search
MPPRRASKQSASIASGFSEGSTSTSQELVPSDVGPKITDALSSWTSGGEDILKNLISTQL
ESAVTSASTLSTIPLSNTIIQILASQLDPNAVAELFTKSIEGSDEGHVEVFGEALVDVVE
VMEQEREDTVEEQKPNEDTEMTESEGKPKSPSGLPVIKLLLEKDRLPPHIANLLLNADRL
VDLGLHPFPRQPRALQSALVKKNTTLFFKQRKYNLMRECSEGFSGLIVLLTGPDALPHSV
EETLSETDLERKERANRVWSKIMGLIGYFNLSPPRVLDIILEIFSCHVAVHWRFFLELLK
CSPWGAAALGANDKGKGKAVVSWPEDELESVGDALHPGGDRVLAQVLGFKFGFYQKPEGG
ETPIGLTYMAALLLKHSFVSLADLLPFLSPDDSQMEEIRKKWYSSVSSRSGPSNALSNTV
LQDDEAPVASTANDSETGGPPPKPPPEQRIQLAQALLAIGDLPSALYFLSRFPWIAQSYI
AIADLILRTLSHALEDLYRSYTPPTTDADDEDLLMDVKAPTASDELKERFPTLHSPPPPE
TSIRSFEFFYPDWRTGVEVWTSAEEIHSKGLRWLSLIRGLGGRDSSIMVKICRIGVAHFS
ALRQEKEARYDSDKAIRQTVSAEPTAQEMKPWLDIIRMSLLPSLSCSNATAAFDVELWSL
LSFFPYTVRYSLYGEWRDSTCNFKGRTPCVVASHAAAECTKEVQKALRRVTSSSTSGSAS
AATQAERHSARSLAKLSHGNPLFLWTTAVTQVKAYPNIGQAIVDAGRYMTQLSFDVATFV
MLDTLSDDRAQRLNETGTGVAMWLERLSKFVGDFNRRYTNMDLGPVLQYIINRLMRGHSG
DLIILEKLMSTMSGIEPVPNDGVSEKQLQAYGAGKEMVREAFNATRVQIAPPPEPGSTDK
PKEGPVDKVKNIKKSLPRLVNALRGTGLALPIWIALAQTRQAVVDKLANTPLKAMNLVQD
TCHTAFIQFGDFLAEQLSSEEQLSSTPNLLELVNDFNLEYGMAFQILRPRLNVELERAKA
EWNADVQKRLDAARRAKSEQVNSPIKGTNGLPDSPSVATLVEGEDVNMEEIKTEHVNGDT
ISTETTNTPAPKAGGKAKPWWPLALTATMKQAKQLLPDDVNEVLSAPFFVIFWHLTMSDI
AFSSESYDEAIKAINRNISVVSGWRIMAKDKSALADQQAELTRLRNRVAILDKEKEAHGK
EVKSSRKRLKSESSKWFGKSIVDRNQTKYLASQLHQYCFYPRAILTPCDAVFVANFIRTA
HDLGTVGFSTLFVYNTFFNDNLAGCIFSCTDSEARNLGRCLAAILSDLDVWHRDEKKYKR
EALGLPEDPVEGKTSKPLPGMLVKPRGSDVFRPMLWREFRGYYKTCHNTLTKALVSCWSE
AEFMHNKNAIIVALQVIKFFPIMDTNGKDIEDAVRKLQSGDNGEITNDLKMLCLSFLTSL
KKRQEIRPYLPEAKFFSPPNQRNGQAKNAPTGPRSGDSPATNGDATPQPSTNGGSTPVPS
GPSTSDPKATLRQQLEESRAKQLAIKGESKGTPEPVAQASKAATPIPSRAPSPSQEMNKP
ASPPAGPRQTRSSAAPTGPSGGNRSTSDNRNTPAPTGPSTRGPPERPGSSATATTSTAAM
GPPSDLSVDEARAAARARKFGIIKRPAPPPSSASPGPTSAPTMPSAPPIPDDPPRAKSPT
PVPSRRTSPAPRTHRSGSVESKASVGSRRSSRRDRDDRDRDSRDKRRRDERDRDRDRDRD
RDKTREPSTTGVEDVRDRRRQEDLLQARHDRLATTAASDDRRGDSRRGSRDTTSHRKDLE
KDKEDRKAKDIKERSGASHRERDRDERGEKRKRDEEPRRIDEPPNASRRDRDRRHDDRDR
DVRGTDRDRERDRDRDRDRDRRDRDRDDRDRRGGRDERNPRDNRDNRDSRPSRDIQQDNR
RSPIPDRRPNDPVPPNGRPSGGGGVGGDRTPKRGDDNSSKELLPPLAQLPLQTRNDEQGQ
GSRQRPDDRIVEPPRQTRSSVPPSQQSTQGSQSQGGGGNNNRLAHALPPRPGQNNQSTPS
NNTRGGGGGGGGGGNGNGPSLAMRMGPAPPGPASGSERRNSPPSQSQNYRSENNSRDERT
ENSEPRKRPLEDNGTPAREESPGASKRVKIDRDRIRGGKREGSGPGGRIFDAAMGGARDK
NT seq
6483 nt
NT seq
+upstream
nt +downstream
nt
atgcctcctcggcgtgcatcgaagcagtcagcctcaatcgcgtcaggcttctctgaaggc
tcgacttcaacttcccaagagttagttccgagcgatgtcggacctaaaataaccgatgct
ctgtcatcctggacttcgggaggcgaagatatcctcaaaaacttgatatcgactcaactc
gaatcagctgtaacttccgcatcaaccttgagtacaatacccctgtcgaataccattatt
cagatcctagcatcgcaattagatccaaatgctgtagcggaactgttcaccaaaagtatc
gaaggatcagacgaaggtcatgtggaggtatttggcgaagctttggtggatgttgtagaa
gttatggaacaggagagggaagatactgtggaagagcagaaaccaaacgaagataccgaa
atgaccgaatccgaggggaaaccgaaatcaccttctggtttaccagttatcaaacttctc
cttgagaaggacagacttccccctcacattgcaaaccttctcttgaatgccgatcgtctt
gtcgaccttggtttacatcctttccctcgtcaaccccgagctctgcaaagcgctctagtg
aagaaaaataccactctcttcttcaagcaaagaaagtacaatctaatgcgagaatgttca
gaaggattttctggacttatcgtacttcttacaggtccagacgctctacctcactctgtc
gaagagactttatcggaaacagatttggaaagaaaggaacgagcaaacagggtttggtcg
aaaatcatgggattgataggatacttcaatttatctcccccaagagtactagacatcatc
cttgagatttttagttgtcatgtggcggtacactggagattctttctagaacttttgaaa
tgctcaccatggggtgcagctgcacttggagctaacgataaaggtaaaggcaaggcagtc
gtatcatggccagaggatgaactggagagtgtaggagatgcattgcaccctggcggcgat
cgagtcctggctcaggtattaggcttcaagtttggtttctatcagaagcccgaaggaggt
gaaacacctataggtctgacttacatggccgctcttctgctcaagcacagttttgtcagc
ttagccgacctcctaccatttctttcacctgatgattcgcagatggaggaaattaggaaa
aagtggtattcttctgttagctcacgttctggaccatccaatgccttatcaaacacggtt
cttcaagatgatgaggcgccagtagcatcgaccgctaacgattcagagactggtggacca
cctcctaaacctcctcccgaacagcggatacagctcgcccaagctctcttggctattggt
gatttaccttcggcactatatttcctcagcagattcccttggatagctcaaagttatatc
gctattgctgatctcatactgcggacactttcacatgccctcgaggatctctatagatcg
tatacaccgcccaccaccgatgcggatgacgaagaccttttgatggatgtgaaagcgcct
accgcatctgacgaactcaaggaacgtttccctacccttcattcgcctccgccacccgaa
accagcatacggtctttcgagtttttctaccctgattggagaacaggcgtggaagtctgg
acatccgcagaagaaatacactcaaaagggctgaggtggctttctcttattcggggacta
ggtggaagggactcttcgatcatggtgaaaatatgccgaatcggggttgctcacttctct
gctttacgtcaggagaaagaagccagatatgattcagataaagcgataaggcaaacagtc
agtgcagaacccacggcacaagagatgaagccttggcttgacatcatacggatgtcacta
cttccttcattatcctgctccaacgcaacagcagcgttcgatgtggaactgtggtctcta
ctcagcttctttccatacaccgtgcggtacagtctatatggagaatggcgagacagtact
tgcaattttaagggaaggactccttgcgtagtcgcttcgcatgctgctgctgaatgcacc
aaagaagtacaaaaagcgctgcgacgggtaacgtcttcttcaaccagtggatcagcatca
gctgctacacaagctgaaagacattcagctcggtcgctcgcaaaactcagtcatggaaat
ccactcttcctctggaccactgctgtcactcaagtaaaggcttaccctaatatcggtcaa
gccattgtggacgctggaagatacatgactcaactatcatttgatgtagccacctttgtc
atgctcgacacactatccgatgacagggcacaacgtcttaacgagaccggtaccggggtg
gccatgtggcttgaacgtttatccaaatttgttggtgatttcaatcgtcgctataccaat
atggatctcggccctgttctacaatatatcatcaacagacttatgcgaggccattcagga
gatttaatcatacttgaaaagttgatgagtactatgtctggaattgaacctgttccaaat
gatggtgtctctgagaaacaactacaagcctatggtgctggtaaggaaatggtacgagag
gcgttcaacgctactcgtgtacaaattgctcctccacccgagcctggcagtacggataaa
ccaaaagaaggacctgtagataaagtgaaaaatatcaagaaatcattacctagattagtg
aatgcgctgcgagggaccggtctagctcttcccatttggatcgcccttgcacaaactagg
caagctgttgtcgataaattagcgaacacaccgcttaaagctatgaacctggtacaagac
acttgtcacactgcattcatccaatttggtgatttccttgcagagcagctatcttcagaa
gaacaattgagctccactcccaatctcctggaattagtgaatgatttcaatcttgaatac
gggatggctttccaaatccttcgacctcgactaaatgttgaattggaacgagcaaaagca
gaatggaatgccgatgtacagaagcgattggacgcggccaggagagcgaaaagtgaacag
gtgaattcgcctattaagggtaccaacggtcttcccgactcaccgagtgtggcaactttg
gtagaaggagaggacgtcaacatggaagaaataaagacggagcatgtaaatggtgataca
atatccactgaaacaacaaataccccagcgccgaaagctggtgggaaagcgaaaccctgg
tggcctctcgctttgacggcaacgatgaaacaggctaaacaacttctccctgatgacgta
aatgaagtcttgagtgctccgttctttgttatcttctggcatcttactatgtccgatatt
gccttttcatctgaaagttatgacgaagctatcaaagccatcaatcgaaatatctccgtt
gtttctggatggcgaataatggctaaagataaatcagctttagctgatcaacaagccgaa
ttaaccaggttgagaaatagagttgctattttggacaaagagaaagaagcacatggtaaa
gaagtgaaatctagccggaaaagattgaagtcggaatcttccaaatggttcggcaagtca
attgtcgatcgaaatcagaccaaataccttgcttctcaacttcatcaatattgtttctac
cctcgagcgatccttacaccttgtgatgctgtcttcgtagcaaatttcatccgaacggcg
catgacttgggtacagtcggattttccactctattcgtctataatacattcttcaacgac
aatctcgctggatgtatattctcttgtacagatagtgaagctagaaatctaggaagatgt
ctcgcggccattttatccgatttggatgtttggcatcgagatgagaagaaatataaacgc
gaagctcttggactaccggaagatccagttgaggggaaaacgtcaaaacctcttcctgga
atgttagtcaaaccaagaggatcggatgtattcagacccatgttgtggagagaatttaga
ggatattataaaacctgtcataacactcttacaaaggctttggtatcatgctggtctgaa
gctgaattcatgcacaacaaaaatgcgatcatcgtcgctttgcaagttatcaagttcttc
cctatcatggataccaatggtaaggatatcgaagatgctgtcaggaaattacaaagtggc
gataatggagaaatcacgaatgatctgaagatgctgtgtctttctttcctgactagtttg
aagaagagacaggaaatcagaccatacttaccggaagcgaaatttttctctccacctaat
caacgaaatggtcaagccaagaatgcgcccactggtccccgatcaggggacagtcccgct
actaatggagacgccacaccgcaacctagtacaaatggtggatccactcccgtaccttca
ggtccatccacttccgaccccaaagctactctgcgtcaacagttggaagagagtcgagcg
aaacaactggctatcaaaggagaatcaaagggtacccctgaaccggtggcccaagcttcg
aaagctgctacgccaatcccgtctcgagcgccatccccgtcgcaagaaatgaacaaacct
gcctccccacctgctggtccgagacaaacacgatcttctgctgctcctacaggtccttca
ggtggcaatcgttctacttccgacaatcggaatacaccagccccaacaggaccttccacc
agaggaccgccagagagacctgggtctagcgcaacggcaaccacatccactgctgctatg
ggacctccgagtgatctctcagtagatgaagctcgtgcagctgctagagccagaaaattt
ggtattatcaaacgacccgctcccccaccttcctcggcttcccctggtcccacttctgca
cctactatgccttccgctccccccattccagatgatccacctcgagcgaaatcacctaca
ccagtcccatcaagaaggacttctcccgctcctcgaacacacagaagcggtagtgtcgaa
tctaaagccagtgttggctcaaggaggtcatctaggcgagacagagatgaccgtgatagg
gacagtagggataagagaagacgggatgaaagggacagggatcgagacagagatagagac
agggataagactcgcgaaccttcgactacgggcgtggaagatgtccgagaccgccgaaga
caggaagatctactacaagctaggcatgatagactggccactacagctgcttctgacgat
cgacgcggcgactccagacgtggatcaagagacacaacaagtcacagaaaggatcttgag
aaagataaagaagatagaaaagccaaagacataaaggaaagaagtggtgccagtcacaga
gaaagagaccgagatgagagaggtgaaaagaggaaaagagatgaagaaccccgaagaatt
gacgaacccccaaatgcatcaagaagagatagggatagaagacatgatgatcgagatcgg
gacgtcagaggcacagatcgagatcgtgagagggatagggatagggatagggatagagat
cgacgtgatagagatagagatgaccgtgatagacgtggaggaagggatgagaggaatcca
agggataatcgagataatagagatagtaggccttcaagagatattcaacaagacaatcga
agaagccctataccagatcgaagaccaaatgatcctgtacctcctaatggtcgaccaagc
ggcggtggcggagtcggtggggatcgaacgcctaaaagaggagatgacaactcatcaaag
gagttactccctcctctcgctcaacttccacttcagacgagaaatgatgaacaaggtcaa
ggctcaagacaaagacccgatgataggattgtcgaaccacccagacaaacaagatcatct
gttcctccctcccaacaaagtactcaaggaagtcaaagtcaaggaggaggaggaaataat
aatcggttagcccatgctttacctcctcgacctgggcaaaataaccaatctaccccttcg
aataataccagaggtggcggaggtggtggaggtggcggaggaaatggaaatggacctagt
ttagccatgagaatgggtcctgcacctccaggtccggcttcaggaagtgaaagacggaat
tcaccccctagtcaaagtcaaaattacagatctgagaacaattcaagagatgaaagaaca
gaaaacagcgagccaagaaaaagacctttggaggataatggaactcctgcaagggaagaa
tcccccggagcgtcaaaaagggttaaaatcgatcgcgatcgaataagaggtggaaaaagg
gaaggttccggtccaggtggacggatctttgacgctgcaatgggcggagcaagagataag
tga
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integrated database retrieval system
