Kwoniella shivajii: 87956769
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Entry
87956769 CDS
T10982
Symbol
IL334_004638
Name
(RefSeq) uncharacterized protein
KO
K12600
superkiller protein 3
Organism
ksh Kwoniella shivajii
Pathway
ksh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ksh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
87956769 (IL334_004638)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ksh03019
]
87956769 (IL334_004638)
Messenger RNA biogenesis [BR:
ksh03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
87956769 (IL334_004638)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_17
TPR_16
TPR_1
TPR_8
TPR_19
TPR_CcmH_CycH
TPR_14
TPR_12
TPR_9
TPR_11
ANAPC3
TPR_6
TPR_7
TPR_20
ARM_TT21_N
ChAPs
Alkyl_sulf_dimr
Sel1
ANAPC5
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
87956769
NCBI-ProteinID:
XP_062792406
LinkDB
All DBs
Position
6:complement(join(399132..399657,399730..400340,400405..400614,400673..401593,401647..402014,402078..402496,402557..402714,402771..403090,403153..403400,403456..403910,403978..404053,404112..404248,404314..404371,404454..404584))
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AA seq
1545 aa
AA seq
DB search
MSSTKKAIKSIKTHLEARDSETALYEATNLLKSIGESAPEAASVLIFRGLALTQLQRKEE
AEKSYLHAYKLQPTNPLASVGLRKLYEKNESWEKLGSFLEVLVQATYDDGDGEKCAEALQ
DLSELRVKHGPPEKLYIALDQLLPSSPLVPLLQSLPPPGGSYVPFPAPIYPPASAAISPS
LPTPLPHALHLVASLPLLTNLLVRAESSVYTNVEAKVKAGRSRIGGGTEKEVRRKVEAEV
LGGELGLKMVELLKEVGSHPNVAEDVRREVEIREFNFWRKLGSCLPHKKDDRSAPTKPAK
KPPTPKSESTDLTTPALFQPKAYPPFNKEDALARANNLANGFVLLEITGKGAEEGWSWVL
EGKDEPTLFYDIELLHKYAKAFPESKMTDFIDDYCRWFKLPLPDPEEEAEAVASTANGES
APSNVKQTRKPRNRKGRSGMNARERRKARRAAGKEGLLTEDLDQEEREELVSGMTKLLDQ
LPRSIFAHRVMARISLQEEDWSNAIAFADKGRQLLKELESERGTSMANVRASLETNLGMA
LVPYFSPKHHPRAIRLLDGVLKSYPSNAEARFARAQIHQAAGKWAYARKEFQTLLDSGGD
EKDVVSSKEELGWCFVNEGELEKGREVLEEVVEIRDARKEEQEGKDDEAFARARAWWRLG
KTEWMIGDQESRQHAEEWFMASIRALPTFPSAYTSLGICYSSAIPPDEERALKCFQKAFE
LDATETEAAHKLAIGYANEDEWSLVRTIAVRVMEGEGGVDGVAGGEVMNAKGRFAPQNGW
AWKALGSTEVHYKNYAKAAQAYQIALRADPDDVSMWVMLGESYVKSGRHVAGLKTLTHAL
ELQPDNWRALYNIGDTQAQLGVFDKAIEAYEMVIVLTGTKEVGVTAALAQANLSLGRQSA
SGGFRQRSRNALHSAIHLATEVLRDGRSHRAWAWKTIGDAAFVLSNEESSLDEALASSEV
IQPVLQYLVEDDTDRRSQVVGLGHAANLLQTSPDLEYTLKTSIFAFAYRAYLLKNEPRVA
DPALYDLASSLHSLALRLSDGETKISCLKAAISAIRLALERDAGDERLWNALGVICGTAG
PQIAQHAFVVSLELYSKDPVVWSNLAYLYLRLDDHELANQCFLKAQITDPDYAPAWFGQG
MLAEKNGEKDNAKALYSHSVTLSAGSLLEADLALAITTFEKFLIPGVQIETHLLHQPAFA
LRHYCHQRPNDFAAAHLYALICERLGLADEAATTLERAAGLLEEEFERTESDDIETKYAI
ALCNLGRLQLAAKKYQPSLETLNNCWELISETTDGTIAALKIQCKLLQGLTYYWLGQIDE
SLEAFQGSLDEASASQDIKSREEVAVLLSRTLWGLGGEDAKETAKSNLMECLSQEKPSLK
VISTLAAISIVSSDADLEEAAMSELLSRPLESRIREDPAGQSDLVLYLHALLEGRAEEAH
EILEKALHASPTNIKARNRLAEALIQTGHAKEAVTTLENSGKVDEVESKAKMERLRGTAQ
ILDGNDSGITNLQKSVMVTPWEEDSWNALAWGRKLAVEADGEEDA
NT seq
4638 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccaccaagaaagcgatcaaatcaatcaaaacacatttagaagcaagagattcc
gaaacagcgttatacgaagcgaccaatctacttaaatcgatcggggaaagtgcacccgaa
gcagctagcgtgttgatattcagaggtttagctcttactcaattgcaacgcaaggaagaa
gctgaaaagtcgtaccttcatgcatacaaattacaaccaacgaatccgttagcatccgta
gggctcagaaaactgtacgaaaagaatgaaagctgggaaaaactgggatcgttcctggaa
gtactggtacaagcaacttatgacgatggtgatggagagaaatgtgccgaggcattacaa
gatctatcggagctgagagtcaagcatgggccaccggagaaattgtatatagcattggat
caacttttaccttcctcgccccttgtacctcttctacaatctttgcctcctcctggaggc
tcatatgtccctttccccgctcccatatatccacctgcatcagcagctatctctccatcc
cttccaacacccttaccacatgcattacatctagtggcatcattacctcttttaaccaat
ctcctcgttcgagccgaatcatcagtatacacaaacgttgaagcaaaagtcaaagcagga
agatccaggataggtggtggaacggagaaagaggttagacgaaaagtggaagctgaagta
cttggtggtgaactgggtctgaaaatggtggaattattgaaagaagtgggatcgcatcct
aatgtggctgaggacgtaaggagagaagttgaaattagagaattcaatttctggagaaaa
ttgggttcatgtttaccacataaaaaagacgataggtcagcacctacaaaaccggccaaa
aagccaccaactccaaaatcagagtcgacagatttgactactccagctctctttcagcct
aaggcatatccaccattcaacaaggaagacgccctcgcacgagctaacaatctcgctaac
ggattcgttctccttgaaattaccggaaaaggagctgaagaaggctggtcatgggtgttg
gaaggaaaagacgaacctacccttttctatgatattgagctgctacataaatatgccaaa
gctttccccgaatcgaagatgacagatttcatcgatgattattgtagatggttcaaactg
cctttaccggacccagaggaggaagcggaggcagttgcatcgactgcaaatggagaatct
gccccttccaatgtcaagcaaaccagaaagcctaggaacagaaagggaagaagtggtatg
aacgcaagggagcgtcgtaaagcccgtagagccgccggtaaagaaggtctattgacggaa
gatctcgatcaagaggaaagagaggagttagtatctggaatgacgaaactgcttgatcaa
ttgcctcgttcgatatttgctcatcgagttatggcaagaatctctttacaagaggaagac
tggtcaaatgcaatcgcattcgctgacaaaggtagacaactactcaaagagctcgaaagt
gaacgaggaacatcaatggcaaatgttcgagcatcacttgaaaccaatcttggtatggcg
ctcgtgccgtacttttctccaaaacaccatcctcgtgcaatccgactgctcgatggtgtt
ctcaagagctatccgagcaatgccgaagcgcgatttgcaagagcgcagatccaccaagct
gctggcaaatgggcatatgcgagaaaagagttccagaccctccttgactctggcggagat
gaaaaggatgtggtttcctcaaaagaggagctgggttggtgttttgtgaatgaaggcgaa
ctcgaaaagggtcgtgaggtattggaggaagtagtagaaataagggatgcaaggaaggag
gagcaagaaggcaaagatgatgaagcatttgcacgagcgagagcatggtggagacttggt
aaaaccgaatggatgataggagatcaagaaagtcgtcagcatgcagaagaatggttcatg
gcatctattcgggctttacccacctttccctccgcgtatacatcgctcggtatatgctat
tcatcggcaattcctccagatgaagaacgagccctcaaatgtttccaaaaagctttcgaa
ttagatgctaccgagactgaagctgcgcacaagctcgccatcggctacgccaatgaagac
gaatggtcactggtcagaacgatcgcggtcagggtcatggaaggtgaaggtggtgtagat
ggtgtggcaggtggtgaggtcatgaatgccaaaggaaggtttgcgcctcaaaacggttgg
gcatggaaggcgctaggttcgacagaggtgcattacaaaaactatgccaaagccgcgcaa
gcttatcagatcgcgcttcgagcggatccagatgacgtctcaatgtgggttatgcttggg
gagtcctacgtcaaaagtggtcgacatgtcgcaggtttgaagactttgacgcatgctttg
gaactacaacccgacaattggagagcactatataacatcggtgatactcaagctcagctc
ggcgtcttcgataaggccatagaagcgtacgaaatggtcatagtattgactggaaccaag
gaggtcggggttactgccgctcttgctcaggcaaatctgtcattgggtcgtcagtctgct
tcaggagggttcagacaacgatcaagaaatgctttacattctgcgatccacctagctacc
gaagtgcttagggatggacgaagtcatcgagcctgggcatggaaaaccattggagacgcg
gcattcgtgctcagtaacgaggagtcaagtctggacgaagccttagcctcatctgaagtg
atacaacctgtcctccagtatctcgtcgaggatgatacagatcgacgatcccaagttgtg
ggtttaggtcacgcagctaacctactacaaacatcccctgacctcgaatataccctgaag
acatctatattcgccttcgcctatcgggcgtatctcctaaaaaacgaacctcgagtggcg
gaccctgcgctatacgacttggcttcctcccttcattcactcgctctgagattatccgat
ggtgagacgaagatatcatgcctgaaagcagctatttctgctattaggttagcgttggaa
cgagacgctggagatgagaggctgtggaacgcattaggtgtcatttgcggtacagctgga
cctcaaatcgctcaacacgccttcgttgtgtctttggaattgtattctaaagatcctgtc
gtgtggtccaatctggcgtatctctatctgcgattggacgatcacgaactagccaatcaa
tgtttcctcaaagcccaaatcaccgatcctgattatgcacccgcatggtttggtcaaggt
atgttagcagagaaaaacggtgaaaaagataacgcaaaagcactctactctcactcggtt
actctgtcggcgggatctctgcttgaagcggatcttgctttggcaataacaactttcgaa
aaattcctcatccccggcgtccaaatcgaaactcatctcttgcaccagcctgcatttgct
cttcgtcactattgccaccaaaggccaaacgatttcgctgccgctcacctttacgcgctg
atatgcgagcgactcggactggctgatgaagctgctacaacgcttgaaagagccgctgga
ctgctcgaagaagagtttgaaagaactgaatctgatgatatcgaaaccaaatacgcaatt
gcactgtgcaatcttggaaggctacaactcgctgctaaaaaatatcaaccttctctggaa
acgctcaacaattgctgggaattgatatctgagactacggatgggactatcgccgcacta
aaaatacaatgtaaactgttacaaggtttgacgtattattggcttggtcagattgatgaa
tcccttgaagcgtttcaaggtagtttggacgaagcctctgcatcgcaagatatcaagtca
agagaagaagtggctgtacttctgagtaggacactatggggtcttggaggtgaagatgct
aaagaaactgctaagagcaacctaatggagtgtttatcgcaagagaagccatccctcaaa
gtcatatctaccttggctgcgatttcgatcgtttcttctgatgctgatcttgaggaagcg
gcaatgtcggaacttctttcacgacctctcgaatctcgcatacgagaagatccagccgga
cagtcagatctggtactctaccttcatgccttactggaaggtagagcagaagaagctcat
gaaattcttgaaaaggctctgcatgcttctccgacgaatatcaaagccagaaacagactt
gcagaagctctgattcaaactggacacgccaaagaagcagttactacactggaaaacagc
gggaaagtagacgaggtggaaagtaaagccaagatggaaagattgagaggaacagcgcaa
atcttggatggtaatgatagtggtataacaaatttacagaagagtgtcatggtcactcct
tgggaagaagacagttggaatgctctggcatggggcaggaaattggcagtggaagctgac
ggagaggaggatgcttag
DBGET
integrated database retrieval system
