KEGG   Kwoniella shivajii: 87956922
Entry
87956922          CDS       T10982                                 
Symbol
IL334_004791
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
  KO
K03010  DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Organism
ksh  Kwoniella shivajii
Pathway
ksh03020  RNA polymerase
ksh03420  Nucleotide excision repair
Brite
Enzymes [BR:ksh01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     87956922 (IL334_004791)
Transcription machinery [BR:ksh03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     87956922 (IL334_004791)
DNA repair and recombination proteins [BR:ksh03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      87956922 (IL334_004791)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_4 RNA_pol_Rpb2_5 MRNIP RNA_pol_Rpb2_45
Other DBs
NCBI-GeneID: 87956922
NCBI-ProteinID: XP_062792557
LinkDB
Position
6:complement(join(839642..839669,839737..839914,839983..840037,840109..841230,841288..842259,842316..842825,842884..843171,843227..843487,843556..843897))
AA seq 1251 aa
MSQEPNNAVIDDGFSYDPNYDYTQNASQDVKVDDDLKYGIDGDMEGEEEEEEPISQEDYW
TVINAFFDEKGLVRQQLESFNEFIENTMQEIVDDHSKMTMDQFTQYTGVAGDETKRYEIS
FGQIYLARVNHTEMDGRTNMLFPQEARLRNLTYSAPLYVDIKKRILTASGVDDPIEADWR
PAVGSDGVPEGVEEDKASIGKVPVMVRSNFCLLHNLPDDQCHDIGECHYDQGGYFIISGS
EKVLIAQERMATNHVFVFLKAAPSRWTYFAEINSQKEKGGKVAAHSEVRLYQRVQGQSGG
VIRVSLPYTKVDIPLVIVFRALGIVPDRDVLNHICFGPNDEALLEYLQPSIEESFAVQDR
ETALDFIGRRGQHEKAPRAQRQRAAFDILHKEFLPHVSTAEGFESKKAYFLGYMVHRLIS
AAMGRKELDDRDHFGNKRLDLAGPLMAEMFGHMFQKLREDMYRYLKKCVETNKAFALNTA
IRPNSITDGLKYALATGNWGKRGNTRAGVSQVLNRYTFASTLSHLRRTNTPIGRDSKAAK
PRQLHNTHWGMVCPAETPEGAACGLVKNLALMSYISVGSYSAPVMEFLEEWGLEELNEYQ
HAPQATKIFVNGVWMGIHRDAPTLHSNLLQMRRGGQLKHEVSIVRDIRERELRLYTDAGR
CCRPLFIVDHPTQSLRLRRAHIDRLEEAGEEGALAGAWDQLLSEGIIEYVDASEEETILI
AMTSEDLENARRKNNKEELVKDRAAHDLESFDPTARIKSTVFSKQYTHMEIHPSMILGVC
ASIVPFPDHNQSPRNTYQSAMGKQAMGVFLTNYQLRMDTMANILYYPQKPLATTRSMEYL
KFSELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFRSLYYRSYTDTEKMKGMIKAE
TIEKPDRNETLRMKHGSSDRYAKLDVDGLVSPATNINGDDILIGKTAPLPEESEELGQRT
QLHQKRDISTPLKSTEQGVVDQVMLTTNGEGHKFVKIRVRSTRVPQIGDKFASRHGQKGT
IGITYRQEDMPFSAEGLVPDIIINPHAIPSRMTIGHLVECLLSKVSTLTGAEGDATPFTE
LTVEAVSKVLRQKGYHSRGFEVLYHGHTGKKLQAQVYFGPTYYQRLKHMVDDKIHARARG
PLQILTRQPVEGRSRDGGLRFGEMERDCMISHGIAGFLKERMYDSSDAFRIHVCDICGLM
AVANLKKQEFYCSVCRNSTQISQVYIPYAAKLLFQELQAMNIACRMYGESD
NT seq 3756 nt   +upstreamnt  +downstreamnt
atgtcacaagaaccaaataatgctgttatcgatgatggattctcttacgatccaaattac
gattatacccaaaatgcaagtcaagatgtaaaagtagatgatgatttgaaatatggtata
gatggtgatatggaaggagaggaggaagaagaagaacctattagtcaagaagattattgg
actgtcataaacgctttctttgatgaaaaaggtttagtaagacaacagttggaatcattc
aatgagtttatcgagaatacaatgcaggagattgtagacgatcattcaaaaatgactatg
gatcagttcacacaatatacgggtgtagcaggcgatgaaactaaacgatatgaaatctca
tttggacaaatctatctcgctcgtgtaaatcatactgaaatggatggtagaacaaatatg
cttttcccccaagaagcacgtttacggaatctaacatattcagctccactttacgttgat
atcaagaagaggatactgacagcttccggcgtggatgacccaattgaggcggactggagg
cctgctgttggatctgatggtgtaccagaaggtgtggaagaggataaggcgtccatcgga
aaagtacctgtcatggtccgatcaaatttctgtcttttacataatcttcctgacgaccaa
tgtcatgatatcggagagtgtcattacgaccaaggtggttatttcatcatttcaggttca
gagaaggttctaattgcgcaagagagaatggctacgaaccatgtgttcgtcttcttgaaa
gccgctccttctagatggacgtactttgcggagatcaacagtcagaaagagaagggtgga
aaagtagctgctcattccgaagtccggctgtatcaacgagtacaaggacaatccggtggt
gtcattcgtgtatctctaccttacaccaaagtcgatattccccttgtaatcgtattcaga
gctcttggtattgtcccagatcgagatgttctcaatcacatttgtttcggtcctaatgat
gaagcgttactcgaataccttcaaccttctatcgaagaatcattcgcggtacaagaccga
gagacggctttggatttcattggtcgaagaggtcaacatgaaaaagctcctagagctcaa
cgtcaacgagctgccttcgatatcctccacaaggaattcttgcctcatgtatccaccgct
gagggtttcgaatccaagaaagcatacttcctcggttatatggttcatcgattgatttca
gctgctatgggtagaaaagaattagatgatcgagatcactttggtaacaagcgtttggat
ttggctggccccttgatggctgagatgtttggtcacatgttccagaaattgagagaagat
atgtatagatatttgaaaaagtgcgttgagacgaataaagctttcgccttgaacactgca
ataaggccgaacagtatcactgatggtctaaaatacgctttggcgaccggtaactggggt
aaacgaggcaatacaagagctggtgtttctcaagtgctcaatcgatatactttcgcttct
acactttctcatttgcgacgtacaaacactcccattggtcgtgacagtaaggcggctaaa
cctcgacaactgcacaacactcattggggtatggtttgtcctgctgaaacacctgaagga
gctgcgtgtggtttggtcaaaaacttagctctcatgtcgtatatatcggttggttcgtac
tcagctccagtgatggaattcttagaagaatggggtttggaagaattgaacgaatatcaa
catgccccacaagcaacgaaaatcttcgtcaacggtgtgtggatgggtatacatcgagat
gctcctacattacattcgaatctattacaaatgcgaagaggtggtcaactcaaacacgag
gtgtctatcgttcgagatattcgagaaagggaattgcggttatataccgatgctggtaga
tgttgtcgaccattattcattgtagatcatcctactcaaagtctcagactcaggcgagca
catatcgatcgtttggaagaagctggagaagaaggggcattggctggtgcatgggatcag
ttgttatcagagggtattatcgaatacgttgacgcatctgaagaggagaccattctcatt
gcgatgacttctgaggacctggagaatgccagaaggaagaacaataaagaggagttggtc
aaagatagggcagcacatgatttagagtctttcgatcctacagcgagaatcaagagtaca
gtgttcagtaaacaatatacgcatatggagatccatccaagtatgatcttaggtgtctgt
gctagtattgtacccttccccgatcataatcaatctccccgtaatacctaccaatctgcg
atgggtaaacaagcgatgggagttttcctcaccaattatcaacttcgtatggatactatg
gcaaatattctgtactatcctcaaaaacctcttgctaccactcgatcgatggaatacctc
aaattctcagaacttcctgcaggtcaaaatgctatcgtcgccatcatgtgttattctggt
tacaatcaagaagattccgtcattatgaaccaatcgtccattgatagaggtttattccgt
tcgttatattaccgatcgtacaccgatactgagaaaatgaaaggtatgatcaaagcggag
accattgagaaacctgatcgaaacgagacgttgaggatgaaacatggatcaagtgataga
tatgccaaattagatgtagatggtttggtcagtccagctaccaatatcaatggagatgat
atattgattggtaaaactgcacctttacctgaagaaagtgaagaactcggtcaaagaact
caacttcaccaaaagagagacatttctaccccattgaagagtacggaacagggtgttgta
gatcaggtcatgctgacaaccaatggagaaggacataaattcgttaagatcagagtgaga
tcaactcgagtacctcaaattggtgacaaattcgcatctcgacacggtcaaaaaggtact
atcggtatcacatatagacaagaagatatgcctttctctgcagaaggcttggtgcctgat
attattatcaaccctcatgctattccatcgcgaatgacaattggacatttggttgaatgt
ctactatcaaaagtatcaactttaacaggtgcagaaggtgatgcaacacctttcactgaa
ttgactgtcgaagcggtatcaaaggttttgagacagaaagggtatcattcaagaggattc
gaagttttatatcacggtcatacaggtaaaaaacttcaagctcaagtctactttgggcca
acgtattatcaaagattgaagcacatggtagatgacaaaattcatgcgagagctagaggt
ccattacaaatcttgactagacaacctgtcgaaggtagaagtagagatggtggtttacga
ttcggtgaaatggagagagattgtatgatctcacatggtatcgctggtttcctaaaagaa
aggatgtatgattcatccgacgctttccgaatacatgtttgtgatatttgtggtttaatg
gcagtcgccaatttgaaaaaacaagaattctattgctcagtctgtaggaatagtacacaa
atctcgcaagtgtatataccatacgctgcgaaactgttattccaagaacttcaagctatg
aatatagcttgtcgaatgtatggtgaaagtgattaa

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