Kwoniella shivajii: 87956934
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Entry
87956934 CDS
T10982
Symbol
IL334_004803
Name
(RefSeq) uncharacterized protein
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
ksh Kwoniella shivajii
Pathway
ksh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ksh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
87956934 (IL334_004803)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ksh03021
]
87956934 (IL334_004803)
Enzymes [BR:
ksh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
87956934 (IL334_004803)
Transcription machinery [BR:
ksh03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
87956934 (IL334_004803)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
87956934
NCBI-ProteinID:
XP_062792569
LinkDB
All DBs
Position
6:complement(join(875224..875448,875540..875761,875834..875962,876034..878919,878976..879197,879252..880125,880197..880558,880624..880783,880880..881064))
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AA seq
1754 aa
AA seq
DB search
MDISHSIHSEVTSLSFSFLSSDDVKAISVKKLDNPILLDNLNLPTRGGLYDPKLGPMSAR
DVCETCHLSYFACPGHFGHIELPTPVFHPLFMNQCYGLLRTVCLFCHHFKMPELILASYV
ARIRLLDAGLLTESHEVASIFAKAMGTSTSRDDEPNDDEEEIAGGGGGPKTITKENAAEL
IVRVDAYVSATLEAAKKASNGSTRDSYKDGLVFEERKRLLAEFSKKNWGKCTRCAAYAYT
FRKEKAVKIIEYDLSLKHKQANKMANLKKRDVLAISNKFSKHRRSADPQDIDEGIEMDSD
RSSAEEDNAMDVDEDDESSEDIGNEQDEEGQEEIARAVAKTASGQVKGARGRNERVMSAA
EVRAHLRLLFAKEPEICKLLYGRHGGPSPQQVVSGPLADMFFMDVIPVTPTRFRPPAKMG
DELFENSQNSLLSAVITTAVRIQEHNGRLIEQAKVEKGEAVLEAVAKVDAARAFEKLLEA
LIKLQHDVNSFMDSTKNPAMMRQGQLPPQGVKQLLEKKEGLFRKHMMGKRVNYAARSVIS
PDINIETNEIGIPPVFAKKLTYPEPVTEQNVHYLRQLVINGPKVHPGAALVQNEDGTQIS
LDRTTLEQRTAIANQLLTPQGDDHGIGSSTGPPKKNKKVYRHIQDGDVVILNRQPTLHKP
SMMVHTVKVLLGEKTIRMHYANCNSYNADFDGDEMNIHFPQNEVARAEAKFIANTDNQYL
VPTSGNPLRGLIQDHVVAGVWMCNKSSFFTREQYFQLIYGALRTEDNYTGRDRIVTLPPA
IFKPRPLWTGKQIMSTILANLTPLNAKGLNLTSKNKVQNKLWARDDSSDPTMSEENVIFL
DGHLICGVLDKSQYGASAYGLVHSVHELYGPYIANRLLGVLSRLLTKYLQHNAFSCRMDD
LILTAEGEKIRKDILDKASGDGATAAMKYVGLPEGSKIEDIETAKNLTIRLEEILRDDHL
MAGLDAVMQSAFNKTTSKINNDVLPDHLVRPFPDNNMQMMTISGAKGSKVNASQISTLLG
QQALEGRRVPTMVSGKTLPAFKPFDTTARAGGYVANRFLTGIRPQEYYFHCMAGREGLID
TAVKTSRSGYLQRCLIKHLEGVRVHYDHTVRDSDSSVLQFMYGEDSLDVTKQKHLEHFDF
AARNHTSLVNKIRPRDVDGKVNDIAIGHMKKALKKPRKYDPALSLFAPSRHIGSMSEEYA
KKLNQYIDDNKFGYISKKGEHKSSPFASERIPDKEFLGLARARYMRSLVEPGEAVGLLAS
QGVGEPSTQMTLNTFHLAGHGAANVTLGIPRLREIVMTASAKPTTPTMKLPLRETISDRD
TETFIKQVSRLTLSQVVERVTVTERLSSKSSESSGTRQRKYTVLIEFYPPEEYAPEHEIT
PEQLHEALAFSFAPRLKKEILGEMRNVAKSAQQDLQVGKGLKVKIGGDDLADEEAENGTG
ADVDGEGNAKRRGRDDELDDDDEDSYQLKRTQQSRQHEYEEDSQADSGIADLEDFVEKEL
NNGEGDDDDGDEDGDINTEDAIEKARKNQKADDLAELFKLGSKYATTFSFDDHSGKSAQF
DLEFPANAPKLLLVDLIERTCRAAVVHEITNIGRCMKIFSDKGEFTRTLITEGSNLRGMW
ALADELVNLDNLASNDIYAILTTYGVEAARRAIIDEISSVFGAYGIAVDYRHLTIIADYM
THAGGYRPFNRTGIAAKSSPLLKASFETTVAFLSEATLHGDFDDLTSPAAKIVLGKPSSS
GTGAFDIRAPTRIA
NT seq
5265 nt
NT seq
+upstream
nt +downstream
nt
atggatatctcccattctatccattcagaggtgacctcgttgtccttctcattcctctca
tcagacgatgtgaaagccatatcagtcaaaaagctggacaacccaatactgctggataac
ctgaatttgccaacgagaggaggattatatgatcctaaattaggacccatgagcgctcgg
gatgtctgtgaaacatgtcacctatcatattttgcttgtccgggtcatttcggtcatatc
gaacttcccactcctgtctttcaccctcttttcatgaatcaatgttatggattactacgg
acagtctgtttgttctgtcatcactttaagatgcctgagctcatcctcgcttcatacgtc
gctcgtataagacttcttgatgctggtcttttgactgaatcacacgaagttgcttcaata
ttcgccaaagcaatggggacttctacttctcgggatgatgaacctaatgatgatgaagaa
gaaatcgctggtggcggtggtggacctaagaccatcacaaaagagaatgctgcagagttg
atagtcagagtagacgcatacgtatcagcaacactcgaagcagccaaaaaagcaagtaat
ggaagtacgagagattcgtataaagatggcctggttttcgaggaaaggaaaaggcttcta
gctgaattctcaaagaagaactggggtaaatgtactcgatgtgctgcctacgcttatact
ttccgaaaggagaaagcggtcaaaatcatcgagtatgatctctcactaaagcacaaacaa
gctaataaaatggcaaacctgaaaaaacgagatgtacttgctatcagcaacaagttttcc
aagcatcgacgatctgctgatccacaagatatcgatgaaggtatagagatggacagtgat
agaagtagtgcagaggaagacaacgcgatggatgtagatgaagatgatgaatcttccgaa
gatatcggaaacgaacaggatgaagaaggtcaagaagagatcgcacgagcagtagctaaa
accgcaagtggacaagtgaaaggtgctagaggaaggaatgaaagagtcatgtctgccgca
gaagttcgagctcatcttcgattactttttgctaaagaacctgaaatctgtaaacttctt
tatggaagacatggtggaccttctcctcaacaagttgtctctggtcctttggcagatatg
ttcttcatggatgttatccctgtcacaccaacacgtttcagacctcctgcaaaaatggga
gatgaactattcgaaaactcgcaaaattcccttctatcagctgtcatcactactgctgtt
cgaatacaggaacacaatggacgattgatcgaacaagctaaagtggagaagggagaagca
gtcctagaagctgttgcgaaagttgacgctgctcgagcattcgaaaagttgcttgaagct
ttaatcaagttgcaacatgatgtcaacagtttcatggatagtacaaagaatccagccatg
atgagacaaggacaactaccaccacaaggtgtcaaacagttattggagaagaaagagggt
ctattcaggaagcatatgatgggtaaacgagtaaactacgctgctcggtctgtcatttca
ccagatatcaacattgaaacgaatgaaattggtatcccccctgttttcgccaaaaagcta
acatacccggaacctgtcactgaacaaaatgtgcactatttgagacaattagtgataaat
ggtcctaaagttcatcctggtgcagctttggtgcagaatgaggatggaacccaaatctca
ctggatcgaacaaccctcgaacagcgaactgccatcgccaaccaactgcttacacctcaa
ggtgacgatcatggaattggaagtagcactgggccacctaagaagaacaaaaaggtatat
cgacatattcaagatggcgatgtagtcattctgaatcgacaaccaacattgcataaaccc
agtatgatggttcacaccgttaaggtattactaggtgaaaagaccattcggatgcactat
gccaattgtaactcttacaatgctgatttcgatggtgacgaaatgaacattcatttccct
caaaacgaagtcgctcgagctgaagctaaattcatcgccaataccgataatcaatatctc
gtacctacatctggtaatccccttcgaggtttgattcaagatcacgttgttgctggtgta
tggatgtgtaacaagtcgtccttcttcacaagagaacaatatttccaacttatatacggt
gctcttcgaacagaagacaactacacaggtcgagatcgaatcgttactttacctccggca
atcttcaaacctcgacctttgtggaccggtaaacaaatcatgtctacaatattggcaaat
cttaccccactcaatgcaaaaggtttgaatctgacttcgaagaataaagtgcagaacaag
ctatgggcaagagacgattcgtctgatccaacaatgtcagaagagaacgttatcttcctt
gatggtcatttgatatgtggtgttttagataaatcacaatatggtgcttcagcttatggt
ctcgtacattccgttcatgaattatacggtccttatatcgccaatcgacttcttggggtt
ctcagtagattgttgacgaaataccttcaacataatgctttctcatgtaggatggatgac
ttgatattgactgccgaaggtgaaaagataaggaaagatatcttggataaagcttccgga
gatggtgccaccgctgcgatgaagtatgtcggacttccagaaggatcaaaaattgaagat
attgaaaccgccaaaaatctcacaatccgattagaagaaattctccgtgatgaccatcta
atggctggtcttgacgccgtcatgcaatctgctttcaacaaaactacttccaagatcaat
aacgacgtccttcccgatcacttggtccgacctttccctgacaataatatgcaaatgatg
actatttccggtgccaaaggttccaaagtcaatgcttcccagatctcaactctgttaggt
caacaagcattggaaggtagacgtgtaccgacaatggtatctggtaaaacactacccgca
ttcaaacctttcgataccacagctagagcgggtggatatgtcgccaatcgattcttgact
ggtatccgacctcaagaatattatttccattgtatggctggaagagaaggtttgattgat
accgctgtcaaaaccagtcgatccggttatttacagcgttgtctcatcaaacatctcgaa
ggtgtgcgagtacactacgatcacactgtcagagatagtgattcttcagtcttacaattc
atgtacggtgaagattcccttgatgtcaccaaacagaaacatttggaacatttcgacttt
gcagctagaaatcatacttctttagtgaacaaaatccgaccgagagatgtcgacggaaag
gtaaatgatatagctatcggacatatgaagaaagctttgaagaaacctcgcaaatacgat
cctgcattatctctgtttgctccatcaagacacataggatcaatgtctgaagaatatgcc
aagaaattgaatcaatatatcgatgacaacaaattcggatacatatcgaaaaaaggagaa
cacaaatcaagtccattcgcaagtgagagaatcccagataaagaattcttgggtttggca
agagctagatatatgagaagtttagttgaacctggagaagcagttggtttacttgcttct
caaggtgttggagaaccttcgacgcagatgactttgaacactttccatttagctggtcac
ggtgcagcaaatgtcaccctcggtatccctcgtttaagagaaatcgtcatgactgcttca
gcaaaacctaccacaccaacaatgaaattaccccttcgagaaacgatttctgatcgtgat
actgaaactttcatcaaacaagtttctcgattaactttatctcaagttgttgaacgagta
actgtcaccgagagattgtcatccaaatcctccgaatcaagtggtacaagacaacgaaag
tacaccgtcttgattgaattctacccgccagaagaatatgcacctgaacacgaaatcact
cctgaacaattacatgaagcgttggcattcagcttcgcgcctcgattgaagaaggagatc
ttgggtgaaatgaggaatgtagccaaatccgctcaacaagatttacaagttggtaaagga
ttgaaagttaagattggtggagatgatttagctgatgaagaagctgaaaatggaactgga
gcagatgtggatggtgaaggaaatgccaaaagacgtgggagggatgatgaattagacgat
gatgatgaagattcatatcaattgaaaagaactcaacaatcaagacaacatgaatatgaa
gaagattcacaagcagattcaggtatagcagatttagaagatttcgtcgaaaaagaattg
aacaacggagaaggtgatgatgatgatggagatgaagatggagatataaacaccgaagac
gcgattgaaaaagcacgaaaaaaccaaaaagcggatgatctggctgaattgttcaaatta
ggtagtaaatacgctactacttttagctttgatgaccattctggaaaatctgctcaattc
gatttagaattccctgcaaatgctcctaaactgttgttggtcgatttgatcgaaagaact
tgtcgtgcagctgtagttcatgaaataacaaatattggaagatgtatgaagatcttctct
gacaaaggagagtttactcgaacactcataacggaaggatccaatctccgaggcatgtgg
gcattggccgatgaactcgtcaaccttgataatcttgcttccaacgatatttacgccatc
ttgaccacatacggagtagaagctgccagaagagccatcatagatgaaatcagtagtgtt
ttcggtgcttatggaatcgcagttgattatagacatttaacaatcatagcagattacatg
acacacgcaggtggatatagaccatttaaccggactggtatagcagcaaaatcatcccct
ctcttaaaagcttctttcgaaactacagtagctttcttatctgaagccacccttcatggt
gatttcgatgatctaacttctccagcggctaaaatagtattgggtaaaccaagttcaagt
ggtactggtgctttcgatattagagctcccacaaggattgcttag
DBGET
integrated database retrieval system
