Kwoniella shivajii: 87958215
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Entry
87958215 CDS
T10982
Symbol
IL334_006085
Name
(RefSeq) uncharacterized protein
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
ksh Kwoniella shivajii
Pathway
ksh03008
Ribosome biogenesis in eukaryotes
ksh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ksh00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
87958215 (IL334_006085)
09123 Folding, sorting and degradation
03018 RNA degradation
87958215 (IL334_006085)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ksh03021
]
87958215 (IL334_006085)
03019 Messenger RNA biogenesis [BR:
ksh03019
]
87958215 (IL334_006085)
03009 Ribosome biogenesis [BR:
ksh03009
]
87958215 (IL334_006085)
03016 Transfer RNA biogenesis [BR:
ksh03016
]
87958215 (IL334_006085)
Transcription machinery [BR:
ksh03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
87958215 (IL334_006085)
Messenger RNA biogenesis [BR:
ksh03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
87958215 (IL334_006085)
Ribosome biogenesis [BR:
ksh03009
]
Eukaryotic type
Pre-60S particles
RNases
87958215 (IL334_006085)
Transfer RNA biogenesis [BR:
ksh03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
87958215 (IL334_006085)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
DUF7687
zf-CCHC_3
Motif
Other DBs
NCBI-GeneID:
87958215
NCBI-ProteinID:
XP_062793840
LinkDB
All DBs
Position
8:complement(join(888850..889085,889226..889261,889313..889904,889969..890284,890365..890568,890647..891559,891629..892018,892100..892453,892568..892750,892837..892986,893073..893241,893327..893329))
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AA seq
1181 aa
AA seq
DB search
MGVPALFRWLSKKYPKIVSRVVEDTPKKVRTQDGEIEEIPVQYDGPNPNGFEVDNLYLDM
NGIVHPCTHPEGKPAPETEEEMMVEIFNYTERVVNMTRPRKVLMMAIDGVAPRAKMNQQR
SRRFRAAQEAADKEEERREAIKMFEAMGHQVSEETQNHKSWDTNAITPGTPFMDLLSISL
KYWVSYKLSTDPGWKNLKVILSDSGVPGEGEHKIMDWIRRQRSHETWNANTSHVIYGLDA
DLIMLSLATHEPHFRVLREDVFAQGNKGPQPCKNCGQSGHLTSNCIGEKKKKDPNVVEVA
KPVDPKPFIFLDVSCLREYLAVELNLPGVPFSFDLELAIDDWIFMIFFVGNDFLPHLPSL
EIREGAIDVLLKIWRAELPRMGGYLTNHGKVNLDRAQIILEGLAKNEDEIFQKRKEDEER
QDHHSKRRRVDDHRRQNEAKSSSKSGAPDSSHTRFDSPPKGTMQLNGQEYVAIEPSATAR
GGALHPSLPSRPAFDIVPKEEAEKKENDAVKKGIAAMSNTASNSDIVKNRRAIRMANLSA
AQALKAELEGDHEIETVTVENTEDEEKEQLPLEEAKDILEQQGEDEGVDEEIVPPALKSD
EDEGEAAIGEETIVVDEEEPGDDNEETPRTNKRKRTRGDNTEENDEDDDDDESSNSDDDD
VEAPPNPEADQPVPKKKLKVNPDGTVEGYEDDVKLWEPGYRERYYEKKFGSSLSDTDFIT
QITRSYMEGLCWVLEYYYQGVPAWDWYYPYHYAPFAQDFKDIGKFNIEFKVSQPFKPFAQ
LLGVFPAASRIHLPEPLQTLMTNDDSPILDFYPSDFEIDMNGKKMAWQGVALLPFIDQHR
LLAALKSKEDELTDDEKRRNSWGDNVMFVGANNTQGLYDSLCDLYGLKAKSITKPIEIDP
RKSDEMTGSVLPDTNCIPGSTLESPLPSIDECPDLDGDTEAGHSANTSISVRYYFPRQAH
PHRSIILPRYKPGPSRLNESDKDWVRRNGNGGGGGGHRGKGPRYGNGGDNRTGGPGMSRG
GYHQTPQPNQPQRSANGYPKPPQGAPSSGYGSYGNGGYNPPPPRPVAAYGAAPQSYTGGG
SYNAPAAPGGYGGYGGYGGGSAYSAYNPPPPVPQGRNPNPYAAPPPNPYGAPPRPAYGAQ
GGQGGYGGSGRGGYNPYGGGGGNGAYQPRNNGGGGGGGRRY
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtcccagccttgttcagatggttatctaagaaatatcctaaaatcgtttctagg
gtagttgaagatacacctaaaaaagttagaacgcaagatggtgaaattgaagaaatacca
gtacaatatgatggacctaatccgaatggatttgaagtggataatctgtacttggatatg
aacggtatcgtacatccgtgtacacatccagagggtaaaccagcacctgaaacagaagag
gaaatgatggttgagatcttcaactatactgaaagggtagtcaacatgactagacctaga
aaggtgctcatgatggctattgatggtgttgccccaagagcaaagatgaatcaacaacgt
tcgagaagattcagagcagcccaagaagctgctgataaagaggaggaaaggagagaagct
atcaagatgttcgaagctatgggtcatcaagtttcagaagagactcagaatcataaatct
tgggatacgaatgctatcactcccggaacaccattcatggatctattatcaatatcattg
aaatattgggtttcatataaactatcaactgatccaggatggaaaaacttgaaagtaatc
ttatccgattcaggtgtacctggagaaggtgaacataaaattatggactggataagacgt
caacgttcgcacgaaacttggaatgccaatacatcacatgtcatttatggattagacgcg
gatttgattatgctttctttagctactcatgaacctcatttcagagttttgagagaagac
gttttcgctcaaggtaataaaggtcctcaaccatgtaagaattgtggtcaatcaggtcat
ctaacttcgaactgtattggtgagaagaagaagaaagatcctaacgtcgtcgaagtggct
aaaccagtcgatcctaaaccattcatcttccttgacgtctcatgtctcagagaatatcta
gcagttgaactaaatcttccgggtgtaccattctcatttgaccttgaattagctatagat
gattggattttcatgattttcttcgttggaaatgatttcttaccgcatttaccaagtttg
gaaattcgtgaaggtgccattgatgttttactgaaaatatggagagcggaattacccaga
atgggcggatacttgaccaatcatggtaaagttaatcttgacagagctcaaatcatatta
gaaggcttggcgaagaatgaagatgagatcttccaaaaaagaaaagaagatgaagagcga
caagatcatcattcgaagagaagaagagttgatgaccatcgtcgacagaatgaagctaaa
tcatcgtccaaaagtggtgcgcctgattcatcacatactcgatttgattcgccacccaaa
ggaacaatgcaattgaatggacaagaatacgttgccatcgaaccttcagcaacggccaga
ggaggtgctctacatccttcactaccttctagaccagcgttcgatatcgttcccaaagaa
gaagccgagaagaaagagaatgacgcggtcaagaaaggaatagcagccatgtcaaatact
gcatccaattctgatatagtcaaaaacagaagagccataagaatggccaacctaagtgct
gctcaagctctaaaagctgaactagaaggtgatcatgagatcgagactgtaacagtggaa
aacaccgaggatgaagagaaagagcaactaccactggaagaggccaaggatatactggaa
cagcagggcgaagacgaaggtgtggatgaagaaatcgtgcctcccgctttgaaatcggat
gaagatgaaggcgaagctgcgattggtgaggagaccattgtagtagacgaggaggaaccc
ggcgatgataacgaggaaacaccaagaacaaataagagaaagaggactagaggtgataac
acggaggagaatgatgaagatgatgatgatgacgagtcaagtaattccgatgatgacgat
gtcgaagctcctcctaatcctgaagcagatcaacctgtccccaagaagaagctgaaggtc
aaccctgatggaacagtcgaaggttacgaagatgatgtaaaactctgggaacctgggtat
agagagcgatattatgagaagaagtttggttcgtcattatctgatactgatttcataact
cagatcactcgatcgtacatggaaggactatgctgggtattggaatactactatcaaggt
gttccagcttgggattggtactacccatatcattatgctcctttcgcccaagatttcaaa
gatatcggtaaattcaatattgaattcaaagtcagccaacctttcaaaccttttgcgcaa
ttattaggtgttttcccagctgcgagtcgaatacatttaccagaaccattgcaaacatta
atgacgaatgatgattcaccaatccttgatttctacccatcagactttgagattgatatg
aatggcaaaaaaatggcgtggcaaggtgttgctttgttaccttttattgatcaacatcga
ttactcgccgccttgaaatcgaaagaagatgaattgacagatgacgaaaagagaagaaac
agctggggtgataatgtcatgttcgttggagcaaacaacactcaaggattatatgattcg
ttgtgtgatctatatggactaaaagccaaatcgataacgaagccaatcgagatcgatccc
agaaaatctgatgaaatgacaggatcagtattacctgatacaaactgtatacctggatcg
acattagaatcacctttaccatcaattgatgaatgcccagatttagatggagatacagaa
gctggacattcagccaatacgtctatttcagtccggtattatttccctagacaggcacat
ccgcaccgatcgataattttaccaagatataaacctggaccatcgagattgaatgaaagt
gataaagattgggtaagacgtaacggtaatggaggaggaggaggaggacatcgtggaaaa
ggtccaagatatggcaatggtggtgataacagaactggtggaccaggtatgtcaagaggt
ggatatcatcaaacacctcaaccaaatcaacctcaaagatcagcaaatggttatccaaaa
ccccctcaaggtgctccttcaagcggatatggatcatatggaaatggtggatataatcca
cctccacccagacctgtagctgcatatggagccgcaccgcaatcgtatacaggcggagga
agttataacgctcctgccgctccaggagggtatggtggttacggtggttatggcggcggt
tcagcttacagtgcatacaacccaccaccgccagtgccacaaggtcggaacccgaatcca
tacgctgcaccaccacccaacccgtatggagcaccaccaaggccggcatacggcgctcaa
ggtggtcaaggtggttatggaggttcaggaagaggtggatataatccctatggaggtgga
ggtgggaatggtgcttaccaacctagaaacaacggtggtggtggtggcggtggtagaaga
tattag
DBGET
integrated database retrieval system
