Kwoniella shivajii: 87958494
Help
Entry
87958494 CDS
T10982
Symbol
IL334_006364
Name
(RefSeq) uncharacterized protein
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
ksh Kwoniella shivajii
Pathway
ksh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ksh00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
87958494 (IL334_006364)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ksh03019
]
87958494 (IL334_006364)
Messenger RNA biogenesis [BR:
ksh03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
87958494 (IL334_006364)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
DUF5614
Motif
Other DBs
NCBI-GeneID:
87958494
NCBI-ProteinID:
XP_062794119
LinkDB
All DBs
Position
9:join(103320..103404,103490..103559,103634..103804,103897..104018,104090..104553,104647..104980,105042..105139,105200..105314,105390..105849,105936..105999)
Genome browser
AA seq
660 aa
AA seq
DB search
MDVDDDDAFLYGDESPPKTEVALPPSAEQAPESFNTPTASTSANGLSSSMAASLAAYGIE
PSSAVVDNPEDGGVEEEDEEDEDEEDSDESEDDVKVVFTGQNPRTLDLRKPQTAPSNVIG
IGKWAQSSTGAAAPAVAPSTPQQVSTPSKPVQMTANQTTEYTPTSRPGVSQPSTSSAPTL
NAPLTNPPISSAPNEVQPTLQSQSQPQSQAQQLNPNVNLPPSSLPPVTAASTHPKIDPTN
PSGIIPSTGQSVYEIDMTQFEGSGQPWRKPGSSISDWFNFGFDEISYPRYLRYRTEMEQG
RAAMMNVPPMAPIPQDIANMLHMPFNPMLQQQQQQQAQQQQQQQQQQQMQIMANQIQQQM
GMMNPQMQAQMQQMMAMQGLDMSMMGNNQPGFGIPNQMMQNQPQGGMPQQNMMRQGNTRP
SMTPTPQPAASGTPEAGEEVVKQEEGVETGGEISEPQTQTINPAIRGRVPVRGVPVRGVP
LRGRGVAVPLGPRAGFVAPTGPKAGRFRDKDKVDTSGAGSLDYGASEGGNDSDVPSKSEK
SISAKKEPEDLESKSRSRTRSRSASPLPRKSSSRKSSRRDHDSYSSNESDHEREKRKTSK
KTRDREKEKDKRKREEGGGSATLGPGGWESEGEEEERRSSRRKRSPSEESDKRTRRSKRR
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atggatgttgacgacgacgacgcgttcctttatggagatgaatcacctcccaaaactgag
gtagctttacccccctcggcagaacaagctccggagtctttcaatacgcctacagctagt
acttcggccaatggtcttagctcttctatggctgcctcgctggcagcttacggtatcgaa
ccttcttctgccgtagtggataatcccgaagatggaggtgtagaagaagaagatgaggaa
gatgaggacgaagaagattcagacgaatctgaagatgacgttaaagttgttttcaccggt
caaaatcctagaacactggatctgagaaaacctcaaactgcaccttcaaacgttattgga
ataggtaaatgggcgcaatcaagtacaggtgcagctgcacctgcagtagctccttcaacg
cctcaacaagtctctacgccatctaaacctgtccaaatgactgccaatcaaacgacagaa
tacacacctacatctcgacctggtgtctctcaaccctcaacttcttcagccccaactttg
aatgcacctttgacaaacccacctatatcatcagcaccaaatgaagtacaaccaaccttg
caatctcagtctcaaccacaatcccaagcacagcaacttaatcctaacgtgaatcttcct
ccttcatctcttccaccagtaacagctgcttcaacgcatcctaaaatagatccaaccaac
ccatctggtataataccgtcaaccggacaaagtgtttatgagattgatatgactcaattc
gaaggtagtggtcaaccatggcggaaacccggttcaagtataagtgattggttcaatttc
ggttttgacgaaattagttatcctagatatctgaggtatagaactgagatggaacaaggt
cgcgctgctatgatgaacgtaccacccatggcccctataccgcaagatatagcgaacatg
ctacatatgcctttcaaccctatgcttcagcaacaacagcaacagcaagcgcaacaacag
caacaacagcaacaacagcaacagatgcaaataatggcaaatcagatacaacaacaaatg
ggaatgatgaatcctcagatgcaagctcaaatgcaacagatgatggctatgcagggttta
gatatgagtatgatgggcaataatcagcctggattcggaatcccaaatcagatgatgcaa
aatcaaccacagggtggaatgcctcagcaaaacatgatgagacaaggtaatacgagacca
agtatgacaccaacacctcagccagcagcgtcaggaacacctgaagcaggagaagaagtg
gtgaaacaggaggaaggagttgagaccggcggcgagatatctgaacctcaaactcagacc
atcaatcctgctatacgaggacgtgtgcctgtcagaggagtaccagtgagaggggtaccg
ctacgtggacgaggagttgctgttcctctaggtcccagagctggatttgttgcacctact
gggccgaaagcaggtcggttcagagacaaagataaagtggatacttcgggagctggatca
ttagactatggtgcaagtgaaggtggaaacgattctgatgtcccttctaaatcggagaaa
agcatatcggcaaaaaaagaaccagaggacttagaatccaaatcaagaagcagaaccaga
agtagatcagcaagtcctttacccagaaaaagcagtagcaggaaaagctcgagaagggat
cacgattcttactcttctaacgaaagtgaccatgagagggagaagaggaaaacgtcaaag
aaaacaagagatagagagaaagaaaaggataagaggaaaagagaagaaggtggtggttca
gcaactctaggtccaggtggttgggaatcagaaggcgaagaagaggaaaggaggtcgagt
cgacgtaaaagatcacctagtgaagaatcagacaagcgtacgagaagaagtaagaggcgt
taa
DBGET
integrated database retrieval system
