Kwoniella shivajii: 87958598
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Entry
87958598 CDS
T10982
Symbol
IL334_006468
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ksh Kwoniella shivajii
Pathway
ksh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ksh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
87958598 (IL334_006468)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ksh03019
]
87958598 (IL334_006468)
03041 Spliceosome [BR:
ksh03041
]
87958598 (IL334_006468)
Messenger RNA biogenesis [BR:
ksh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
87958598 (IL334_006468)
Spliceosome [BR:
ksh03041
]
Complex B
Other components
Prp19-related factors
87958598 (IL334_006468)
Complex C
87958598 (IL334_006468)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_2
TPR_12
ARM_TT21_C
GPS2_interact
Motif
Other DBs
NCBI-GeneID:
87958598
NCBI-ProteinID:
XP_062794221
LinkDB
All DBs
Position
9:complement(join(379292..379644,379720..380236,380308..380508,380579..380660,380719..381869,381941..382729))
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AA seq
1030 aa
AA seq
DB search
MAVEDSPLASLSSRFPLTFPIPTPVTHSHLISASDLATEEDLLQNPDNLRSWLSYIHQLK
DRISRLEPPQGDTSSPEESLLGPLSTHVAREGLQQLTLVYERALSIFPTSFKLWRSYINM
RQSYVLGELTNEAKTARQQQSKRGSSFKTNVRELLDAAELANEWKDGLDGIIGYEEWRSL
IATGERMIACLSHLPVPWLLHLSILLHPKCPSAFKRTYARRTFDRALRTLPPSLHGRVWG
LYLRWAELMGGEAGERVWRRYLKVDPSLTERHIAYLLDASPPRPLAASKYLLSLARRAAK
NLYSSLEGKSPYQLFVDFLELVERYADEVGMDEEQTLELKAAKQVAEEQIAKPTEESDSA
PVEEPASINGRLMRIAGPPVPVEQGKIFKPKDAITVKKGPEDLPYDEDIDPANTRLLDVE
GIVEKDGLEVYKDQAGRLWTGLATYWIKRGEFERATTTFERGLAAVVTIRDFTQIFDAYA
EFSETMISTLMDALADEDNIEDEEFDLEETEKELDERMKSFEELMDRRPFIVNEVLLRRN
PNEVVEWEKRVALYGDDDEKVVETYVKALDTINPRKATGPLYPLYVNFAKFYEEGGSKDL
ETGESKSEPDLKQARKILERATKVPFKSVDELAEVWCEWAEMELRNENYDEAIRMMQRAT
TIPRDPKKINFYDESVSPQTRLFKSLKLWSFYSDLEESIGSVESTKAVYDKIMELKIANA
QVIVNYAGFLEENKYFEESFKVYERGIELFHPSVAFEIWNIYLSKFVKRYGGKKLERARD
LFEQALENCPPKFCKPIYLLYAKLEEEHGLAKRSMGIYDRACTTVQDSDKFDMFTIYIAK
ATANFGLPATRPIYERALENLPDKQTAEMCKRFARMERKLGEIDRARAIYAHASQFCDPR
IESGFWEEWNQFEVDTGSEDTFREMLRIKRAVQAAFNTETSFIAAQTAAAAKGAEKPTDT
AQTIAKDAADPMAAMEREMSGTGTAASKKIGGPAFVASTLKTQNAHGIDQSQDEEQTANP
DAIEMDEDEF
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggaagactcccctctagcgtccctttcttcccgattcccacttacgttcccc
atccctactcccgtcactcactctcatctcatctccgcgtccgacctagcgacagaagaa
gacctgcttcaaaaccctgacaatcttcgatcatggctctcgtatattcatcaactgaaa
gacaggatatcgaggttagaaccaccacaaggagatacttcatcacctgaagaaagttta
ctgggtccattatcaacccatgtcgcgagagaagggttacaacaattgaccttggtgtat
gagagggcactgtcgatattcccaacaagtttcaaattatggagatcatatatcaatatg
cgacaatcatatgtacttggagaattgactaatgaagctaaaacggctagacaacaacaa
tcgaaaagaggctcatcgttcaaaactaacgttagagaattattggatgctgccgaatta
gctaatgagtggaaagatggtttagatggtataattggatacgaagaatggagatcttta
atcgcaacaggtgaaagaatgatagcttgtttaagtcatttacctgttccatggctatta
catctttcaattctgttacatccaaaatgtccttccgcattcaaaagaacatatgccaga
agaacattcgatagagctttgagaactttaccaccaagtttacatggaagagtttggggc
ttatatctgagatgggcagagctgatgggcggtgaagcaggagaaagggtttggagaagg
tatttaaaggttgatccgtctctcactgagcgacatattgcctatcttcttgacgcatct
cctcctcgtccgcttgcagcgtccaaatacctgttgtccctcgcccgtcgcgctgctaaa
aacctgtactcctcgctagaaggtaaatcgccataccagctttttgttgatttccttgaa
ttagtagaacgttatgcagacgaagtagggatggatgaagagcaaacgctggaattaaaa
gctgccaaacaagtcgctgaagagcagatagcgaaacctacggaagaaagtgattctgcg
ccagtggaagaaccagcaagtatcaacggaagattgatgagaattgctggaccacccgta
cctgttgaacaaggtaaaatattcaaacccaaagatgctatcacggtgaaaaaaggacct
gaagatctaccgtacgatgaagatatagatcctgccaacacacgtttacttgatgtcgaa
ggtatagtggaaaaagatggattggaagtatacaaagaccaagccggtagattgtggact
ggactggcaacatactggataaaaagaggagaatttgaaagagctacaacaacgttcgaa
agaggtttagcagcagtagtgacgataagggatttcacacaaatctttgatgcttatgcc
gaattctcagagacgatgatctcaactttaatggatgctttagctgatgaagataatatc
gaagatgaagagtttgatttggaagaaaccgaaaaagaattagatgaaagaatgaaatca
ttcgaagaattgatggatagaagaccgtttatagtaaatgaagttttactccgaaggaat
ccaaatgaagttgttgaatgggagaaaagggttgcactatatggtgatgacgatgaaaag
gtggttgaaacttatgtcaaagcgttagatactataaacccaagaaaagctacaggacct
ctttatccactatatgtcaatttcgctaaattctatgaagaaggtggaagtaaagacctc
gaaacaggtgaatcaaagagtgaacctgatcttaaacaagccagaaaaatattggaaaga
gcaacgaaagtacctttcaagagtgtagatgaattagcagaagtttggtgtgaatgggct
gaaatggaattgagaaatgagaattatgacgaagctattcgaatgatgcaaagagctacg
acgatccctcgagatcccaaaaaaatcaacttctatgatgaatccgtttcgccacaaaca
cgtctgttcaaatccctcaaactttggtcattttacagtgatctggaagagtctattggc
tcagtcgaatcaaccaaagctgtttatgacaagattatggaactaaagattgctaatgct
caagtcattgtcaactatgctggattcttagaggagaacaaatacttcgaagagagtttc
aaggtatatgaacgaggtatcgagcttttccatccatcagtagcattcgaaatctggaat
atttacttatccaaattcgtgaagcgatatggtggtaaaaaacttgagcgagccagagat
ctgttcgaacaagcgctagagaattgtccacctaaattctgtaaaccaatttaccttctt
tatgccaaattggaagaagaacatggattagctaaacgatcaatgggaatatatgatcgg
gcatgtacgacagttcaagattcagataagttcgacatgttcactatatatatagcaaaa
gcaaccgcaaactttggattaccagctacacgacctatatatgaaagagctctagaaaac
ttaccggataaacagactgctgagatgtgtaaaagattcgctaggatggaaaggaaatta
ggtgaaattgatagagcaagagctatttacgctcatgcaagtcaattctgtgatccaaga
atcgaaagtggtttctgggaagaatggaatcaattcgaggtcgatactggatccgaagat
actttcagagaaatgctacgaatcaaaagagctgttcaagcagctttcaacactgagaca
tcattcatcgcagctcaaactgctgcagcagcgaaaggagctgaaaaacctacggataca
gcacaaacaatcgctaaagacgcggctgatccgatggccgccatggaaagagaaatgtca
ggtactggtaccgcagcttcaaagaagattggcggacctgctttcgtggcaagtactttg
aaaactcaaaatgctcatggaatagatcaatctcaagatgaagagcaaacagcaaatcca
gatgcgatagaaatggatgaagatgagttttaa
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