Kwoniella shivajii: 87959139
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Entry
87959139 CDS
T10982
Symbol
IL334_007009
Name
(RefSeq) uncharacterized protein
KO
K12881
THO complex subunit 4
Organism
ksh Kwoniella shivajii
Pathway
ksh03013
Nucleocytoplasmic transport
ksh03015
mRNA surveillance pathway
ksh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ksh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
87959139 (IL334_007009)
09122 Translation
03013 Nucleocytoplasmic transport
87959139 (IL334_007009)
03015 mRNA surveillance pathway
87959139 (IL334_007009)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ksh03019
]
87959139 (IL334_007009)
03041 Spliceosome [BR:
ksh03041
]
87959139 (IL334_007009)
Messenger RNA biogenesis [BR:
ksh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
87959139 (IL334_007009)
TREX complex
87959139 (IL334_007009)
Spliceosome [BR:
ksh03041
]
Complex C
Other components
EJC/TREX
87959139 (IL334_007009)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
87959139 (IL334_007009)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_11
RRM_3
Motif
Other DBs
NCBI-GeneID:
87959139
NCBI-ProteinID:
XP_062794755
UniProt:
A0ABZ1D7I7
LinkDB
All DBs
Position
10:complement(join(324664..324690,324756..324870,324922..325123,325225..325327,325727..325774,325877..326068,326139..326264))
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AA seq
270 aa
AA seq
DB search
MDLDKSLDDIAAEKRKTVPQQPRKAPRVSSGNERRSGNAPYARPPARSTDEKWVHDAFQG
PKNNRGDRDRSFNANAGAGAGVPFTGISTRIEVIGLHYEVTPADLKTIFSQAGTLVQGPN
IRYDRSGRSKGEATMEFASPQQAKIAINKFDGAMTKGQTISIKLLPPIVARGPGPRPANG
AGAGAGAGAASGQSLLSRIQGGAPSGPAANAPNAGRGGRGGRGGPGRGRGGNAGGGGRGG
KRGPTSQGDLDKELDNFMTKDATTGDVDMA
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atggatctcgataaatctctcgatgacattgctgctgaaaagcgaaaaacagttcctcaa
caaccacgtaaagctcctcgagtaagtagtggtaatgagagaagatcaggtaatgcacct
tatgctagaccacctgctcggtcaaccgacgagaaatgggtacatgatgcattccaagga
ccaaagaacaatcgtggagatcgtgatagatcttttaacgcgaatgcaggtgcaggtgca
ggcgtcccttttactggtatttcaacgagaatcgaagtcatcggattacactatgaggtc
actcctgcggatctaaagactatattctcacaagccggaactttagttcaaggtcctaat
atacgttacgatcgatctggccgatcaaaaggtgaagctacaatggaattcgcttctccc
caacaggccaagatcgctatcaacaaattcgatggagcgatgaccaaaggtcaaaccatt
tcgattaaacttttaccacctattgtcgccagaggacctggtcctcgacccgccaatggt
gcaggtgcaggtgccggagctggagctgcaagtggtcaatctcttctttccagaatccaa
ggtggtgccccttctggtcctgctgctaacgctccaaatgctggaagaggcggcagagga
ggaagaggaggtcctggtagaggtcgaggtggtaatgcgggtggaggtggaagaggagga
aagagaggtcctacatctcaaggtgatctagataaagaattagacaatttcatgactaaa
gatgctaccactggtgatgtcgatatggcttaa
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integrated database retrieval system
