KEGG   Kwoniella shivajii: 87959334
Entry
87959334          CDS       T10982                                 
Symbol
IL334_007204
Name
(RefSeq) uncharacterized protein
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
ksh  Kwoniella shivajii
Pathway
ksh03030  DNA replication
ksh03410  Base excision repair
ksh03420  Nucleotide excision repair
ksh03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ksh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    87959334 (IL334_007204)
   03410 Base excision repair
    87959334 (IL334_007204)
   03420 Nucleotide excision repair
    87959334 (IL334_007204)
   03430 Mismatch repair
    87959334 (IL334_007204)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ksh03032]
    87959334 (IL334_007204)
   03400 DNA repair and recombination proteins [BR:ksh03400]
    87959334 (IL334_007204)
Enzymes [BR:ksh01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     87959334 (IL334_007204)
    6.5.1.6  DNA ligase (ATP or NAD+)
     87959334 (IL334_007204)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     87959334 (IL334_007204)
DNA replication proteins [BR:ksh03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    87959334 (IL334_007204)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     87959334 (IL334_007204)
DNA repair and recombination proteins [BR:ksh03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     87959334 (IL334_007204)
   NER (nucleotide excision repair)
    Other NER factors
     87959334 (IL334_007204)
   MMR (mismatch excision repair)
    Other MMR factors
     87959334 (IL334_007204)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase eIF-3c_N
Other DBs
NCBI-GeneID: 87959334
NCBI-ProteinID: XP_062794948
LinkDB
Position
10:complement(join(848780..848947,849036..849383,849448..849678,849742..849924,849996..850207,850258..850343,850395..850470,850522..850684,850750..850851,850921..851061,851125..851296,851349..851417,851472..851829,851904..852050,852104..852110))
AA seq 820 aa
MSDIDSPLKSNIAKKKKRVVQSDDEDDNSINGASSSKELVSALSPEAQKRKENSPLHKKA
KPSPAKIASIFAAPPKKTEKQKISFEPSKPPSTSKEGQASKPNGKEVKSVASIFSKPAAT
ASSSKVKVKDEDVDMDMDDDRSSPVKDDEGEDELDDEEEEDEQEEKAAVKLASIFTKNHK
SVPVADKGWKDGEAVPYAALVSTFEKIEATTKRLEILEILTQFFLVVARRDTAKLAKDSN
LLKVVYLCINRLCPDYMGIELGIGESLLIKAIAESTGRATTKIKEDLRKEGDLGKVAMNS
RNTQPTMFKPKALTVPSVFQNLTEIAKATGNASQAKKVGIIKKLLAACQGNEAKFIVRSL
EGKLRIGLADKTLVVALAHAIVLRGMDEKKIPHDKLAAKLEEGAEIVKSVYSELPNYDLV
IPALLEAGVEGLKERCRLTPGVPLKPMLAKPTKAITEVLDRFEGKEFTCEYKYDGERAQV
HLLEDGTVAVFSRNSENMSAKYPDLVQQVPRAIKPSVKSFVIDAEAVAYDLETKKILPFQ
DLSRRKRKDVRAEDITVRVHLFAFDLLYLNGESLLTKTLKERRELLQEHFQPVESEFAFA
KSSDGTSTDEIAAFLEESVKDGCEGLMVKMLASASSTYEPSRRSMNWLKLKKDYLSGVGD
SLDLVVVGAYHGKGKRTSVYGAFLLACYDPDSENYQTICKIGTGFSEEILTQFYELLKPL
ELEVARGDIEQGNAKPDVWFEPKIVWEVLTADLSLSPVYAAAHGLVDSRGISLRFPRFLK
IRDDKSADEATTSEQVSEFYQRQVTAGGGKKGGGEADDFW
NT seq 2463 nt   +upstreamnt  +downstreamnt
atgagtgatatcgattctcccttgaagagcaatatcgctaaaaagaagaaacgcgttgtc
caatctgatgatgaagatgataattcgatcaatggggcttcctcttccaaggagctagtc
agtgctttatcgcctgaggcccaaaaaaggaaagaaaactcaccacttcacaaaaaagct
aaaccttcacctgctaaaatagcttcaatctttgctgctccacctaagaaaaccgaaaag
cagaaaatatcttttgaaccttctaaacccccttctacttcaaaagaaggtcaagcttct
aaaccaaatgggaaagaggttaaatctgtcgcgtcgatcttttctaaaccagctgctact
gcttcatcatcaaaggtgaaagtaaaagatgaagatgtggatatggatatggacgatgac
cgatcgagtccagtgaaagatgacgaaggtgaagatgaattagatgatgaagaggaagaa
gatgaacaagaggaaaaagctgctgttaaacttgcgtctatcttcaccaagaatcataaa
tcagttccggtagctgacaagggctggaaagatggtgaagctgtaccgtatgccgcactc
gtctcaacattcgaaaagattgaagctacaacgaaacgattggagatattggagatactc
actcaattcttcctcgtcgtggcaaggagagataccgccaaactggcaaaggattctaac
ctcctcaaggtagtttacctgtgcatcaacagattgtgtcccgactatatgggtattgag
cttggtataggtgaatcattattgatcaaagcaattgcggaaagtacgggaagagcaaca
acgaagatcaaggaggacctgcggaaagaaggtgatctaggaaaggtcgctatgaattca
agaaatacccagccgaccatgtttaagccaaaagctttgaccgttccatctgtatttcag
aatctaacggagatagcgaaagcaacgggcaatgcttcacaagcgaagaaagttggtatc
atcaagaaactgcttgccgcctgtcagggaaacgaagccaagtttatcgtcagatcgcta
gaaggtaaattgcgaataggtctggcagataagactttagtagtggcattagctcatgca
atagtcttgaggggtatggatgaaaagaagataccgcacgataaacttgcagcgaaactg
gaagaaggcgctgaaatagtgaaatcagtatacagtgaattgccgaattatgatcttgtc
attcctgctctcttggaagccggcgtggaggggctgaaagagcgatgtagactcacacca
ggtgtacctctcaaaccgatgcttgccaagcctacgaaggctatcacggaagttcttgat
cgctttgaagggaaagaattcacgtgtgaatacaagtatgatggtgaacgagctcaagta
catctgctggaagatggaactgtagcggtgttcagcaggaactcagagaatatgagtgcg
aaataccccgatttggttcaacaggttcctagagccatcaagccttccgtcaagtctttt
gtcatcgatgccgaggctgtagcgtatgatctggaaacgaagaagattttgccgttccaa
gacttgagtaggaggaagagaaaggacgtcagagcagaggatatcactgttcgtgtgcat
ctgttcgcttttgacttgttgtatctgaatggcgagtctcttctcacaaaaacactaaag
gaacggcgagaactcctccaagagcacttccaacccgtcgaatcagaattcgcgtttgcc
aaatcatcagacggcacttcgaccgacgagatcgctgctttcctagaagagagtgtgaag
gatggctgtgagggattgatggtgaagatgctggcttccgcaagctcaacttacgaacct
agtagaagaagtatgaactggttgaagctgaagaaggactatttatcaggcgtgggagat
tcacttgatttagtagttgttggagcgtaccacggaaaaggaaaacgtacgtctgtatac
ggcgctttcttgttagcgtgttatgacccagattcagaaaattatcaaacgatatgtaag
attggaactggattctcagaagaaattttgactcaattttacgaattattgaaaccgttg
gaattggaagtagcaagaggtgatatagaacaaggaaatgctaagcccgatgtttggttt
gagccgaaaatcgtttgggaagttttaacagcggatttgagtttgagtccggtgtatgct
gctgctcatggtctggtcgactctagaggaatttcactacgtttccctcgattcttgaag
atacgagacgataaatccgcagatgaagctactacctctgagcaggtatctgaattctac
caaagacaggtgactgctggaggtggtaagaaaggtggcggtgaagccgatgatttctgg
taa

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