Kwoniella shivajii: 87959430
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Entry
87959430 CDS
T10982
Symbol
IL334_007300
Name
(RefSeq) uncharacterized protein
KO
K14284
nuclear RNA export factor
Organism
ksh Kwoniella shivajii
Pathway
ksh03008
Ribosome biogenesis in eukaryotes
ksh03013
Nucleocytoplasmic transport
ksh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ksh00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
87959430 (IL334_007300)
03015 mRNA surveillance pathway
87959430 (IL334_007300)
03008 Ribosome biogenesis in eukaryotes
87959430 (IL334_007300)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ksh03019
]
87959430 (IL334_007300)
03009 Ribosome biogenesis [BR:
ksh03009
]
87959430 (IL334_007300)
Messenger RNA biogenesis [BR:
ksh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
87959430 (IL334_007300)
mRNA cycle factors
Stress granule specific factors
87959430 (IL334_007300)
Ribosome biogenesis [BR:
ksh03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
87959430 (IL334_007300)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NXF_NTF2
TAP_C
LRR_NXF1-5
UBA_8
LRR_8
LRR_4
Motif
Other DBs
NCBI-GeneID:
87959430
NCBI-ProteinID:
XP_062795041
LinkDB
All DBs
Position
10:complement(join(1112759..1113089,1113148..1113214,1113277..1113677,1113729..1113938,1113989..1114278,1114334..1114450,1114510..1114821,1115530..1115775))
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AA seq
657 aa
AA seq
DB search
MAAFQQALANFNNQHGNTASSSSSVSIRGSANGAPSTRGIASALRGAGISREQAMELDNS
NNGGRVGRGGRRGGRSGGPLDQTGRHHPSNASNNKPYQKTAPAGSLASRMSTSGPSNARG
GRPTRGNAPNARNPAGTPPFIKQLQSLSGKAERDHSKSELGKKLHSEEMKEWIRKRVIAE
GILDMSNLPNDPWLKENGILPPGHPNAPANAGTVFWRIIEDVVQKGAGITIHTLSLANNN
LDHLFQLQRLPLTLPDIRALDLSGNPIKHISELDHLRAAGEKKGKANAGAGSLKSLVEIK
LNDSPFREKMLQQPDGAEMYKHDILRRFPGLRILDGVELERIILPIDRKPKVRLTDSQKA
GFIARPFSFPCDVQPGFGEEGVKEPAMQFCAKFFTLFDTDRNAVISGYAPNALISISANT
LPSRSANQTEIQKTRQNRPQPVPFEAWTNLPSRNFFRGTTSIKARMDSLQSPADAERLLR
WWNKAVPKTKHPLTDPSKWAFDTWVLDGEAESTKLCLIIEGEFEEMPSGTYRSFSRTFIL
SPAPAGSSAASAGWPAIILSDTMIVHSYFGTYAFDDQNRSLAVHGVSIIPPSIPPPTTST
PAMDAASQDALVAQVSRRTGMNAQFSNLCLQQNGWDFEASLKNFEEIRGSIPAEAFV
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atggcagctttccagcaggcccttgccaacttcaacaaccaacacggcaatacagcatca
tcctcatcttcggtttcgattcgaggttcagcaaatggagcaccatctacgcgaggtata
gcctcggcactgaggggagccgggatctcccgagaacaagccatggaactcgacaacagt
aataatggcggtagagttggtaggggcggcagaagaggcggtaggtctggaggacctctt
gatcagaccggtcgacatcatccatcaaatgcttccaacaacaaaccatatcaaaaaaca
gcaccagctggatcattagcttcccgtatgtcaacatctggaccatcgaacgctcgaggt
ggtcgacccactagaggaaacgctccgaatgctcgaaacccagctggtactccacccttc
attaagcaacttcaaagtctcagcggtaaagctgagagagatcattcgaaatctgaactc
ggaaagaaacttcacagtgaagaaatgaaagaatggatcagaaagagagtcatcgccgag
ggaattcttgacatgtcgaatcttcccaacgatccgtggctcaaagaaaatggtatactg
ccacctggtcatccaaatgcaccagctaatgcaggcacagtattctggaggattatcgaa
gatgtggtgcaaaagggcgctggtataacaatacatacccttagcttagccaataacaac
ctcgatcacctcttccagcttcaaaggcttcccttaacacttcccgacattcgagctctt
gacttgagtggtaacccaatcaagcatataagcgagctcgatcatttgcgagcggccggt
gaaaagaaaggaaaagccaatgctggtgcaggaagtttgaaaagcttagtggaaatcaag
ttgaatgattctccctttagggagaaaatgcttcaacaaccggacggcgcggaaatgtat
aagcacgatattttacgtcgatttcccggtctcaggatcttggatggcgtagaactcgag
cgtatcatactccctatcgatagaaagccgaaagtccgtctcaccgattcgcaaaaggct
ggcttcattgccaggccattttcgttcccttgcgacgtccaacctggttttggtgaggaa
ggcgtcaaggagccagcaatgcagttctgcgccaaatttttcaccttgttcgacactgat
cgaaatgctgttatttccggatatgcacctaacgcgcttatatcaatctcggccaatact
ttaccctctcgttcagcaaatcaaacggaaattcagaaaactcgacaaaatcggcctcag
cctgtgcctttcgaagcgtggaccaatttgccaagtaggaactttttccgaggaacaacg
agtatcaaagcccgaatggacagtcttcaatcaccagctgatgctgaacgtttattgaga
tggtggaataaagccgttccaaagaccaagcatcctttaacggatccttcgaaatgggcg
tttgatacttgggtgctagatggagaagccgaaagcaccaaattatgcttaataattgag
ggagaatttgaggagatgccttccgggacatatcgatctttctcaagaactttcattctt
tcacctgctccggcaggatcatctgctgccagtgctggatggcccgctatcatcctctca
gacaccatgattgtgcattcgtatttcggtacatacgcattcgacgatcaaaatagatcg
ttggccgttcacggcgtttcgatcataccaccttccatccctccgcctactacgtcaact
cctgctatggacgctgcctctcaagatgcccttgtggctcaagtatcacggagaacaggg
atgaacgcccaattctccaatttgtgtttacagcaaaacggatgggatttcgaagcgtcc
ttgaagaactttgaggaaattagagggtctatccctgccgaggcctttgtttga
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