KEGG   Kwoniella shivajii: 87959523
Entry
87959523          CDS       T10982                                 
Symbol
IL334_007393
Name
(RefSeq) uncharacterized protein
  KO
K12599  antiviral helicase SKI2 [EC:5.6.2.6]
Organism
ksh  Kwoniella shivajii
Pathway
ksh03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ksh00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    87959523 (IL334_007393)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ksh03019]
    87959523 (IL334_007393)
Enzymes [BR:ksh01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     87959523 (IL334_007393)
Messenger RNA biogenesis [BR:ksh03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     87959523 (IL334_007393)
  mRNA degradation factors
   3'-5' decay
    Ski complex
     87959523 (IL334_007393)
SSDB
Motif
Pfam: DSHCT DEAD Ski2_N MTR4_beta-barrel MTR4-like_stalk ResIII Helicase_C DEXQc_Suv3 HTH_Tnp_ISL3 TerB_C
Other DBs
NCBI-GeneID: 87959523
NCBI-ProteinID: XP_062795134
UniProt: A0ABZ1D919
LinkDB
Position
10:complement(join(1377891..1377899,1377959..1377978,1378054..1378222,1378321..1378788,1378861..1379088,1379146..1379276,1379354..1379483,1379563..1379748,1379811..1380173,1380237..1380304,1380371..1380466,1380520..1381121,1381170..1381276,1381328..1381432,1381494..1381626,1381683..1381828,1381890..1381922,1381975..1382070,1382140..1382336,1382410..1382756,1382859..1383082))
AA seq 1285 aa
MSEEEETLLADEAFLELLNTAANPSSNDALSSDELASALGINGPLDRKGALDLLERELLA
PVSNLGGDELWRWQVQPHVDLPIPPLTLEPLHQTHTVTPAFKGIDGEFTHWREGLAPKPP
AHPTLSSSTTRAPGSSQNFVRGKGTYAPFQPGGLEEAAKPEETEDEHQEEEEEGWKTKAP
GMRRGLKLEGADEFLAEMLGQQSIAAKAKRRRREGEFEPQLTVSRLGDEEAEIEEISADS
QAGPSNKNVDDLLPIGRLPAPPPPRRQFKAAVHKEWAHVVDVNQKLVNFDELVPEMAREY
PFELDNFQKEAVYRLEMGDSVFVAAHTSAGKTVVAEYAIALAAKHMTRAIYTSPIKALSN
QKFRDFKTTFDPSTVGILTGDVQINAEGSCLIMTTEILRSMLYKGADLIRDVEFVIFDEV
HYVNDAERGVVWEEVIIMLPEHVNIILLSATVPNTKEFADWVGRTKKKDIYVISTPMRPV
PLEHFLWAGRDIHKIVDSKSHFLGDGYKAAQEATRRKQDKEREAAGLPPVQRTGGRGGAP
IKAKDLPTGKNAPFTKPGAGRGHSNRAGGNGAPAPAAAGRGGAGGRGGRGGGFGGRPSHQ
LDQNVWTHLINYLKKNNLLPVVSFVFSKKRCEEYAQTLSMDLNSAKEKSEVHTTWERALT
RLKGSDKTLPQILRMRDLLSRGIGVHHGGLLPLVKEVVELLFSRGLVKVLFATETFAMGV
NMPAKCVVFSGIRKHDGQSFRNLLPGEYTQMAGRAGRRGLDTTGTVILLSGDELPSVTEL
NEMMLGTPNRLSSQFRLTYNMILNLLRVEALRVEEMIKRSFSENATQKMAPEQQRQIAHA
EKELARLPSVNCDICKTDIDAFYQLSSEVVRVNQSLFKQASYAQNATKIFVPGRVVILRN
GHLPGNLAVLLRSATSLTIDGVKSDAKAWRMLVLVTPGQRSKKEDVKESDVPPRWPPVLP
KGSFPNPQWEIGIYDTTSFSFVTKELLKVDHSGIVDKSSKEPRDKALHDLTILHEDLSTL
PELPEVDWSRIRTVEFQEAIRQRAILHDRLVKLGCQLCEDFQEHYAILHERKVVESGLTS
LKLALSDQNLELLPDYESRVEVLKKLSFIDDNSTVLLKGRVACEINSAPELILTELILEN
ILADYTPEEVVALLSIFVFVEKTDSQPMIEPKIQQGLDVIYRIADQVEREQDKCSVQYDE
FEQKYKVGLVEVVYEWAKGMPFNQITELTDVPEGTIVRVITRLDETCREVRDAARVIGDA
DLFQKMEAAQALIKRDIVFAASLYL
NT seq 3858 nt   +upstreamnt  +downstreamnt
atgagcgaggaagaagagacgttgttagccgacgaagccttcttggagctcttaaataca
gctgccaacccttcatcgaacgatgctttgtcgagcgatgagctagcgtcagctttaggt
atcaatggacctctggacagaaaaggagctttggatctcctggaaagagaactgcttgct
ccagtgagcaatcttggaggagacgaactatggcggtggcaagtacaacctcatgtagat
cttcccatacctcctttaacattggaacctttacatcagactcacactgtcacacctgca
ttcaaaggtatagatggtgaattcacgcattggagagaaggattagcccctaaaccaccc
gctcatcctacactctcgtcatcgactaccagagcaccaggatcgtcacaaaactttgtc
agggggaaaggaacgtatgcacctttccaacctggaggtttggaagaagctgctaagcca
gaagaaacggaagatgaacatcaagaagaagaagaagaaggttggaaaactaaagctccg
ggaatgaggagaggtttgaagttggaaggagccgatgaattcctcgccgaaatgctgggt
caacagtcaatagcagcaaaagctaagcgaagacgacgagaaggggaatttgaacctcaa
ttaaccgtatctagattgggtgacgaagaagctgagattgaagaaataagtgcggatagc
caggctggaccaagtaataagaatgtggacgacttgctaccgatcggtcgacttcctgct
cctccacctccgagaagacagttcaaagccgctgtgcataaagaatgggctcatgtggta
gacgtcaatcagaaactcgtcaacttcgatgagctggtaccggaaatggctagagagtat
cctttcgagctcgacaattttcaaaaagaagctgtatatcgacttgagatgggtgatagt
gtcttcgttgccgctcatacgtctgccggtaagactgtagtagcggaatacgctatcgca
ttagctgcaaaacatatgaccagagcgatatacacatcacctattaaagctctttccaat
caaaaatttcgagacttcaaaactacctttgatccttcgacggtcggtatattgacagga
gatgtccagattaatgcagaaggaagctgtttgattatgactacggaaattttgcgaagc
atgttgtacaaaggagcagatttaatcagagatgtcgaattcgttattttcgacgaggtc
cattatgtcaatgatgctgagcgaggagttgtctgggaagaagtcatcatcatgttgcca
gagcatgtgaacatcattctgctctcagctaccgtaccaaatacaaaggaattcgcagat
tgggttggacgcacgaagaagaaggacatatacgtaatttcgacacctatgcggccagta
cctcttgaacacttcttatgggcaggacgagacatacacaagattgttgactcaaaatca
catttcttgggtgatggttacaaggcggctcaagaagctacgcgtcgaaaacaagataaa
gagcgtgaagcagctggcctaccacctgttcaaaggacaggaggaagagggggcgctcct
atcaaagccaaagatctaccaacggggaaaaacgctcctttcactaaaccaggagctgga
cgtggtcactcaaacagagcaggtgggaatggagcacctgcgccagctgctgctggaaga
ggaggagcaggcgggagaggaggaagagggggaggtttcggtggtaggccaagtcatcaa
ctggatcagaacgtctggactcacctcatcaactatctgaagaagaacaatctgctccct
gtagtcagttttgtcttcagtaagaagcgatgtgaagaatatgctcaaacactcagtatg
gatttaaattcagcaaaggaaaaaagtgaggtccacacaacctgggaaagagctttgact
agattgaaaggatccgataaaacgttaccacagatattgcgaatgagagatctactgagt
agaggtattggtgtccatcatggtggtctgctaccattagtgaaagaggtcgtggaattg
ctgttctctcggggattagtcaaggtactcttcgctaccgagacctttgccatgggtgtc
aacatgcctgctaaatgtgttgtcttctctggtattcggaaacatgatggtcaatctttc
cgaaatcttcttccgggagaatacacccaaatggctggaagagctggacgaagaggttta
gatacgaccggtactgtcatcctcttgagtggagacgaactgccttctgtgacggaattg
aacgaaatgatgcttggtacacccaatcgattgtcctcacagttcagattgacatacaat
atgattttgaacttgttgcgagtagaagcgctcagagtagaagagatgatcaagagaagt
ttctcggaaaatgcaacccaaaagatggcacctgagcaacaacgtcaaattgcgcatgcc
gagaaggaattagctcgattaccaagcgttaactgtgatatctgcaaaaccgacattgac
gcattctatcaactgtcttcggaagtggttcgagtaaaccagtcattgttcaagcaagct
tcttatgctcaaaacgcaactaaaatattcgtacctggacgggtggtaatattgcgaaat
ggacaccttcctggaaatctagctgttcttcttcgaagcgctacaagtcttactatcgat
ggcgtcaagtccgatgctaaggcttggaggatgttggtacttgtaacaccaggtcaaaga
tcaaagaaagaagatgtgaaggaatccgatgtaccacctcgatggccacccgtcttaccg
aaaggctcgttccctaatcctcaatgggaaattggaatatacgataccacaagtttctct
tttgtcactaaagagcttctgaaggttgatcactccggtatagtggacaagagcagtaaa
gagccaagagataaagctctgcatgatctcacaattctgcacgaagatttgtcgacactt
ccagaattgcctgaagtggattggtccagaatcagaacggtcgagttccaggaggcgata
agacagcgggctatcttgcatgacaggctagtgaagctaggttgtcaattgtgtgaagat
ttccaagagcactacgcaatactgcatgagcggaaagtagtcgagtctggattgacttca
ctcaaacttgctttatcggatcaaaatcttgaattactaccagattacgaatcaagagtt
gaagtcttgaaaaaattgtcattcatcgatgataactctactgtccttctgaaagggaga
gtagcttgtgaaatcaattctgcacctgaattgatattgactgaattgatattggaaaac
attttggcggattatacacctgaagaagttgttgcattgctatcaatatttgtctttgtt
gaaaaaacagatagtcaacctatgattgaaccgaagatacagcaaggtttagatgtcatc
tatagaatagcagatcaagttgaaagggaacaagataaatgtagtgttcagtacgatgaa
tttgaacagaagtacaaagttggactggtagaagttgtctatgaatgggcaaaaggaatg
ccgttcaaccaaatcaccgagctcacagatgtacctgaaggaacgatagtccgagtcatc
acaagattagatgagacttgtagagaagtcagagatgcagctcgagttatcggtgatgca
gatctgttccaaaagatggaagctgctcaagctcttatcaagagggatatcgtattcgct
gctagtttgtatctataa

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