Kwoniella shivajii: 87959635
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Entry
87959635 CDS
T10982
Symbol
IL334_007505
Name
(RefSeq) ATP-dependent RNA helicase SUB2
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ksh Kwoniella shivajii
Pathway
ksh03013
Nucleocytoplasmic transport
ksh03015
mRNA surveillance pathway
ksh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ksh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
87959635 (IL334_007505)
09122 Translation
03013 Nucleocytoplasmic transport
87959635 (IL334_007505)
03015 mRNA surveillance pathway
87959635 (IL334_007505)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ksh03019
]
87959635 (IL334_007505)
03041 Spliceosome [BR:
ksh03041
]
87959635 (IL334_007505)
Enzymes [BR:
ksh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
87959635 (IL334_007505)
Messenger RNA biogenesis [BR:
ksh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
87959635 (IL334_007505)
Spliceosome [BR:
ksh03041
]
Complex C
Other components
EJC/TREX
87959635 (IL334_007505)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
87959635 (IL334_007505)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_19
DNA_ligase_A_N
CMS1
Ned1_M
Motif
Other DBs
NCBI-GeneID:
87959635
NCBI-ProteinID:
XP_062795246
LinkDB
All DBs
Position
11:complement(join(166944..167065,167125..167306,167366..167475,167533..167664,167723..167841,168432..168733,168796..168904,168960..169027,169092..169237))
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AA seq
429 aa
AA seq
DB search
MSRPDEEELVDYDEAAEETFAPAATATNGDKADGDKKGSYVGIHSTGFRDFLLKPELLRA
ISDLGFEHPSEVQQECIPQAILGTDVLCQAKSGMGKTAVFVLAALQQIEPVDGEVSIVIL
CHTRELAYQIRNEFARFSKFMTNVRTGVFYGGTPISADQELLASKEKCPHIVVGTPGRTM
ALVRDKKLNASKVKHFVLDECDKMLETLDMRRDVQEIFRATPHHKQVMMFSATLSKDIRT
TCKKFMQSPLEIYVDDETKLTLHGLQQYFLKLEEKEKNRKLNDLLDNLEFNQVCIFVKSV
ARATQLDALLQECNFPSICIHSALPQQERISRFQQFKAFEKRILVATDIFGRGIDVERVN
VVINYDAPADADSYLHRVGRAGRFGTKGLAISFVSSEGDSEVLQKIQERFTVAIPTLPET
IDPATYMTS
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgacctgatgaagaagaactcgttgattacgatgaggccgctgaggagactttc
gcccccgccgccaccgctacaaacggtgacaaagcggatggcgacaaaaaaggttcatat
gtcggaatccactctacaggtttcagggatttcctcttaaagcctgaattacttagagct
atctctgacctcggttttgagcacccttccgaagtgcaacaggaatgtattcctcaagca
attctcggtaccgacgttttatgtcaagccaaatctggtatgggtaagaccgccgtgttt
gtactcgctgctttacagcaaattgaacctgttgatggcgaagtatccatcgtgatctta
tgtcatacccgagaattagcttatcaaatccgaaatgagtttgctcgtttctcaaagttc
atgaccaacgtcagaactggtgtcttctacggtggtacacctatctctgccgatcaagag
cttttagcttcaaaagagaaatgtcctcatattgtcgttggaactcccggtagaacaatg
gctctcgttagagataagaaacttaacgcaagcaaggttaaacactttgtccttgatgag
tgcgacaaaatgctagaaacacttgacatgcgaagagatgttcaagagattttccgagcc
actcctcaccacaaacaagtcatgatgttctccgccactctctccaaggacatccgaacc
acctgcaaaaagttcatgcagtctcctctcgaaatctacgttgacgatgagaccaagttg
accttgcacggtctgcaacaatacttcctcaaactcgaggagaaggagaagaacaggaag
ctcaacgacttgctcgataacctcgaatttaatcaagtctgtatcttcgtcaaatctgtt
gctcgagctactcaactcgatgctttactgcaagaatgtaatttcccctctatctgcatt
cactctgccctccctcaacaagaacgtatctctcgattccaacaattcaaggcattcgag
aaacgtatccttgttgctactgatatctttggtcgaggtattgatgtagagcgagtcaac
gtagtcatcaactacgatgctcctgccgatgctgattcctatctccatcgagtcggtcga
gctggtcgattcggtaccaagggtcttgccatctctttcgtctcaagtgaaggtgattcc
gaagtacttcaaaagatccaagaaagattcactgttgctattccaacattgcctgaaact
atcgatcctgctacttacatgacctcttaa
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