Kwoniella shivajii: 87959691
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Entry
87959691 CDS
T10982
Symbol
IL334_007561
Name
(RefSeq) ATP-dependent RNA helicase ded1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
ksh Kwoniella shivajii
Brite
KEGG Orthology (KO) [BR:
ksh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ksh03019
]
87959691 (IL334_007561)
03041 Spliceosome [BR:
ksh03041
]
87959691 (IL334_007561)
03036 Chromosome and associated proteins [BR:
ksh03036
]
87959691 (IL334_007561)
Enzymes [BR:
ksh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
87959691 (IL334_007561)
Messenger RNA biogenesis [BR:
ksh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
87959691 (IL334_007561)
mRNA cycle factors
Common to processing body (P body) and stress granule
87959691 (IL334_007561)
Spliceosome [BR:
ksh03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
87959691 (IL334_007561)
Chromosome and associated proteins [BR:
ksh03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
87959691 (IL334_007561)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
CMS1
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
87959691
NCBI-ProteinID:
XP_062795302
LinkDB
All DBs
Position
11:join(351722..351773,351877..352298,352354..353521,353615..353943)
Genome browser
AA seq
656 aa
AA seq
DB search
MTTGPVNGLDGLEAKFNSGMKLNPERPAYIPPHLRSRGPGPAAAPGPQFSDAVPAGPGYH
QSPTGLPTPATTPPQQARASYAPPAARGPAFPPAAAPRAAEDGGWGAAPRRSGPPEPRSF
GGGAPGFGSWKNGEHIVGARNPRLEKELFGEAGDGMHQASGINFDKYADIPVEATGEGVP
EPVTEFTTPPIDPVLLENIHYARYTTPTPVQKMSLPIVAGGRDLMACAQTGSGKTGGFLF
PILSAMFTYGPVAPPQDANYGGYNSRRKAYPTALILAPTRELVSQIHDEARKFAYRSWAR
PAVVYGGADIGQQIRALDRGCDILSATPGRLVDLIERGRISLANVKYLVLDEADRMLDMG
FEPQIRQIVEGEDMPGVMDRQTLMFSATFPKEIQMLARSFLKDYVFLSVGRVGSTSENIT
QRIEYVDDADKKSLLLDLLLAEQSGGLVLVFVETKRMADNLCDFLCAQRHNATSIHGDRT
QREREAALHAFRTGRAPILVATAVAARGLDIPNVTHVILYDLPTDVAEYTHRIGRTGRAG
NTGTSTAFFNRGNLNLARDLIDLLKEAHQVIPQWLIDVSSERSFGSYGGGRGGRGRGGGG
GQRSGGRDVRQDRGFGASRGGSGAGGGYGGGFGGYGGGGGGGGFPPAAASGGASWW
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgactactggtccagttaacggcttagatggccttgaagccaaattcaacagtggtatg
aaactcaatcccgaaagacccgcttacatccctcctcacttgagaagccgaggacctgga
cctgctgcagctcctggaccccagttctctgatgctgtacccgctggtccgggttaccat
caatctcccactggacttcctactcctgccaccactccacctcaacaagccagagcttct
tacgctcctcccgctgcccgaggtcccgctttccctcctgctgctgctcccagagccgct
gaggatggtggctggggtgcagctcctcgaagatcaggtcctcctgaacctagatctttc
ggtggcggcgctccaggcttcggtagttggaagaatggcgagcacattgttggtgctcga
aaccctagattagagaaagagttgttcggtgaggcaggtgatggaatgcaccaagcttcc
ggtatcaactttgacaaatacgccgatattcctgtcgaggctactggtgaaggtgtaccc
gaacccgttaccgaattcaccactcctcctatcgatcctgtccttctcgagaacattcac
tacgctcgatacaccacccctactcctgttcaaaagatgtctctccctatcgtcgccggt
ggtcgagatttgatggcttgtgctcaaactggttcaggaaaaaccggtggtttccttttc
cctattctctccgccatgttcacctatggtcctgtcgctcctcctcaggacgccaactac
ggcggttacaacagtcgacgaaaggcctaccccactgcgctcattcttgctcccacccga
gaattggtctctcaaattcacgatgaagctagaaaattcgcttatcgatcatgggctcga
cctgctgttgtttacggaggtgccgatatcggtcaacaaatcagagctcttgacagagga
tgtgatatcctctccgctaccccaggtcgacttgtcgacttgatcgagcgaggcagaatc
tcactcgccaacgtcaagtaccttgttctcgacgaggctgatcgaatgcttgatatgggt
ttcgaaccccaaatcagacaaatcgtcgaaggtgaagatatgcccggtgtcatggacaga
caaaccctcatgttttcagccactttccccaaggaaattcagatgcttgccagatctttc
ttgaaggactacgtcttcctttccgttggtcgggttggttctacctctgaaaacattact
caacgaatcgaatacgttgatgacgccgacaagaaatccttactccttgatctattgctc
gccgaacaatcaggtggtttagtcctcgtctttgtcgagaccaaacgaatggcagacaac
ctctgtgatttcctttgtgctcaacgacacaacgctacctctattcacggtgatcgaact
caacgagaaagagaggcagcccttcacgctttcagaaccggtagagctcccatcctcgtt
gctactgctgtcgctgctcgaggtctcgatatccccaacgtcactcatgtcatcctttat
gacctccctaccgatgtcgctgaatacactcaccgaattggtcgaactggtcgagccggt
aacaccggtacatccactgctttcttcaaccgtggcaacttgaacttggctagagacttg
atcgaccttctcaaggaagctcatcaagtcatcccacaatggcttattgacgtgtcttct
gagcgatcattcggctcttacggcggtggtcgaggtggacgaggccgaggtggcggtggt
ggtcaaagatcaggaggacgagatgtcagacaagatcgtggtttcggtgcatctcgaggc
ggctctggtgctggaggtggttacggaggcggtttcggtggttatggtggcggaggtggt
ggtggtggattcccccctgccgccgcatctggcggtgccagttggtggtaa
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