Kwoniella shivajii: 87959788
Help
Entry
87959788 CDS
T10982
Symbol
IL334_007658
Name
(RefSeq) uncharacterized protein
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
ksh Kwoniella shivajii
Pathway
ksh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ksh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
87959788 (IL334_007658)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ksh03019
]
87959788 (IL334_007658)
Messenger RNA biogenesis [BR:
ksh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
87959788 (IL334_007658)
mRNA degradation factors
5'-3' decay
Decapping complex
87959788 (IL334_007658)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
87959788
NCBI-ProteinID:
XP_062795399
UniProt:
A0ABZ1D998
LinkDB
All DBs
Position
11:complement(join(645602..645628,645690..645785,645884..646130,646196..646317,646395..646752,646834..647164,647236..648051,648127..648249,648330..648503,648591..648846))
Genome browser
AA seq
849 aa
AA seq
DB search
MSGFFGFDTALPERAGQGGAGGGGRQQQFAGFQASNADETFALGGAGEEEDLAVYTWGEG
MGGGLMEGGDELNDETFGGGGNGDFGNNFQFSSQPTNAPSKGYGQSTGGGKIASTQSRYK
PKPVADPFAFSEDDFYSSRPSTKKPAAPKAPSRPKASTAHSGSVDNLWNKPAVSSPGWGT
APSSIAKPTPPPSASFPSHPSQGPPAPGHIKSLEEIEAEMAQMPMPSTSTAAPRQQQVLS
LEEIEKQMMEQIEPPRQPTPQQVAPQREATPSQVPGLAGSGYPSQQALLDSMFPELGKGA
IADQPTAPFAPGQEGQRTQEQQSQPIQPSPEEIARVEELRRRISTKIEAMSKYNNLMGSS
DKDFITRIQLSQLATADPYTSDFYAQVFSALKRSRQIAEGQGEPTVVQVGAGLGLGVGGP
VGNRFGKMGQNTMTKLSTQVKKLVENRAQHQKVANTAALQGALGRVTRGNAAAPRPVLAI
PTSNKPEYRPASQLNEQTGVHRAALTRKQVMFALEELYDATLELEQMRRDAPPPTAMEEI
EVWHARCQAKVDLIWRSLMVMEPLDVSNPHPFISLINPIKGQRLFMRLLRHLPHNQSITL
LSLLIATYIQLDVVARAPPPPVADASLLTKADRLDRAKREGATDHFLHSVIPGVDMIINR
CGLGLVAGMLAISAQRSDVCRVAATRPGVALYTALLSKAQSLIRAPAPDPMNPQQSQPAD
PAEVEQWSKTFTYFLHVLLPHLPEFFPSSVAQKAAFGPGAYLLGGDAISERDGLEMERRE
AEVWGFAAALAVNAAEEDQTALVGALRETILHTVQSARNPTISPARSEMKLRNVNMFLNG
LGLDAAMIE
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggctttttcggatttgacacagctcttcccgaacgagccggtcaaggaggtgca
ggaggaggaggacgacaacagcaattcgcaggtttccaagctagtaatgcggatgaaacc
tttgcattaggtggagcgggagaggaagaagacttggccgtgtatacttggggtgaagga
atgggaggcggtttgatggaaggtggagatgaattgaacgatgagactttcggtggtggt
ggtaatggcgactttggaaacaatttccagttttcctcgcaacctacaaatgcaccttcg
aagggatacggtcaatcaacagggggtggtaaaatagcttcaactcaatctagatataaa
cctaagccagtcgcggaccctttcgctttctcagaagatgatttctattcttcacgacca
tctaccaagaaaccagcagcgccgaaagctccttcaaggcctaaagcctccactgctcat
tctgggtcagtggataacttatggaacaaacctgctgtttctagtccaggatggggcact
gctccaagctctattgccaaaccaactccacctccatctgcttctttcccttcccatcct
tcgcaaggcccccctgcccctggacatatcaaaagtttagaagagattgaagctgaaatg
gcacaaatgcctatgccctcaacttctactgctgcgccaaggcagcaacaagttctatca
cttgaggaaattgaaaaacaaatgatggaacaaattgaaccccctcgtcaacctacaccg
caacaagttgccccacaaagagaagctacaccctcccaagtaccgggacttgcaggatca
ggctatccatctcaacaagctttattggatagtatgttccctgaacttggtaaaggagca
atcgcagatcaacctacagcgcctttcgcaccaggacaagaaggccaacgaacccaagaa
caacaatctcagccaattcaaccttcaccagaggaaatcgcgagggtggaagaattacgg
aggagaatctcaaccaagattgaggctatgtcaaaatacaataacctgatgggatcttcc
gataaagattttatcactcgtattcaactctcccaacttgccacagcagatccttacact
tcagatttctacgctcaagtgttttcagcactcaaaagaagtcggcaaattgctgaagga
cagggcgaacctacagtagttcaagtcggtgctggattaggtctgggtgtcggtggacca
gtgggaaataggttcggtaaaatgggtcaaaatacaatgactaaactttcgacccaagtg
aaaaagctggttgagaatagagctcaacatcaaaaggtagcaaatacggctgctcttcaa
ggtgctctaggacgagtgacgcgtggaaatgcagctgctcctcgacctgtacttgccata
ccaacaagcaacaaacctgaatacagaccagcttctcaactaaacgagcaaacaggtgtt
caccgtgctgctttgaccaggaagcaagtgatgtttgctcttgaggaactttacgacgca
actcttgaacttgaacaaatgagaagagatgcgcctccacctacagctatggaagagatt
gaagtgtggcacgctagatgtcaagccaaggtagatttgatttggagaagtttgatggtt
atggaaccgcttgatgtcagtaatccgcatccttttatttcccttatcaaccctatcaaa
ggccaacgactattcatgagattgcttcgacatttacctcacaaccaaagcattactctt
ctttcacttctcatcgccacttatatccaacttgacgtcgttgcccgagcacctcctcca
cctgttgcggatgcctccttgcttactaaagcagatagattggatagagctaagagagaa
ggagcaaccgaccatttcttgcatagcgtgatccccggtgtcgatatgatcatcaacaga
tgtgggttgggcttagtagctggaatgttggctatttcagctcaaagatcagatgtctgc
agagtagctgctacaaggcccggtgttgcactctacacagcattattgtccaaagcgcaa
agtttgattagagcacctgcaccagatcctatgaaccctcaacaaagtcaacctgctgat
ccagcagaagtggaacaatggtcaaagacattcacatatttcttacatgttttactacca
cacttaccagaatttttcccttcgtcagtcgctcaaaaagcagcatttggaccaggagca
tacttacttgggggagatgcgatttcagagagagatggtctggaaatggaaagacgtgaa
gcagaggtttggggtttcgcagctgctttagctgtaaatgcggctgaagaagatcaaacc
gctttagtcggtgctttgagagagacaattctacatacagtccagtcagcgagaaatcca
actatatcgcctgctagatcagaaatgaaactcagaaatgtcaacatgttcttgaatggt
ttaggtttggacgccgcgatgatcgagtag
DBGET
integrated database retrieval system
