Kwoniella shivajii: 87959896
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Entry
87959896 CDS
T10982
Symbol
IL334_007766
Name
(RefSeq) uncharacterized protein
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ksh Kwoniella shivajii
Pathway
ksh03013
Nucleocytoplasmic transport
ksh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ksh00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
87959896 (IL334_007766)
03015 mRNA surveillance pathway
87959896 (IL334_007766)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ksh03019
]
87959896 (IL334_007766)
Enzymes [BR:
ksh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
87959896 (IL334_007766)
5.6.2.5 RNA 5'-3' helicase
87959896 (IL334_007766)
Messenger RNA biogenesis [BR:
ksh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
87959896 (IL334_007766)
mRNA cycle factors
Common to processing body (P body) and stress granule
87959896 (IL334_007766)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
UvrD-helicase
ResIII
SLFN-g3_helicase
NPHP3_N
DEAD
AAA_22
Helicase_RecD
Ribosomal_S13_N
nSTAND3
AAA_16
PhoH
AAA_25
ATPase
UvrD_C_2
T2SSE
Motif
Other DBs
NCBI-GeneID:
87959896
NCBI-ProteinID:
XP_062795506
LinkDB
All DBs
Position
11:join(960308..960340,960451..960692,960771..960807,960890..961028,961094..961175,961252..961506,961576..961904,961969..962135,962191..962800,962853..963562,963617..963794,963865..964352)
Genome browser
AA seq
1089 aa
AA seq
DB search
MEFSNFEGASQYGPQDDDLTSLYSAVPNSVINGIPPSTINGEDNDNLTNQLSELGIGSVG
GAGVGHDGRGYNNEDEYEEREMLGVGVEHACSYCGIHNPQCVVKCLHCSKWFCNSRGNTS
ASHIVNHLVKAKHKEVVLHKESALGDTVPECYNCGSKNVFMLGFIPAKSDTVVVLLCRQP
CAALTNSRDINWDTSQWSAIIDDRQFLSWLVKIPSEAEQLRARQISLAQISKLEELWRDN
PEARLEDAEAQSGEEEMQPILLRYEDAYQYQNIFGPLVKIEADYDKRMKESQTENDITIR
WDMGLNQKRLAWFCMPKLESGEVRLAVGDELRLKFVGITGGSTGIKGMSAFNKGWGGGES
WEGIGSVIKIPNNVSDEICLELRRNDGVPADCTHGFSVDFVWKATSFDRMQAAMKTFAID
EKSVSGYIYHKLLGHELEPQVLRTQMPKRFSAPNLPELNHSQMAAVKAVLQKPLSLIQGP
PGTGKTVTSASIVYHLAKMNPGQVLVCAPSNVAVDHLCEKIHQTGLKVVRVAAKSREALD
SNVAFLSLHSQVANADTHPELQKLIQLRNDQGELSQSDERKYKSLVRACEKDVLNAADVI
CTTCVGAGDPRLAKFKFRTVLIDEATQSAEPECMIPLVMGCKQAVLVGDHQQLGPVIMNK
KAARAGLSQSLFERLVILGNRPIRLQVQYRMHPCLSEFPSNMFYEGTLQNGVTAPERLRK
NVDFPWPVSDTPMFFHQNLGTEEISSSGTSFLNRTEASNVEKMVTKFFKSGVLPSQIGVI
TPYEGQRSYVASYMQLHGSLKKDLYKEVEVASVDAFQGREKDYIILSCVRSNEHQGIGFL
NDPRRLNVALTRAKYGVVILGNPKVLSKHPLWLYLLTHFKEKSCFVEGPLGNLQPSMIQF
SRPKKSLAAAMDPFKRRESPAGEYMDKNVGRVPGPAAGRFDPSYYRTHNTLSFVPSDAQS
VISQAITNSAFPLFPSGVKNKSYTGYASSVISQQPTNDTIGLAPPSSSAGVKPNNGIGGI
GYSQFDRIGELNGHASGGLNLNGAGKLGRRSSFGSEAASASMYAYGYKGGDNDEDGMSVA
PSQAGMTEF
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atggaattttccaattttgagggagcgtcgcaatacggtccccaagacgatgatttgacc
tcattatactcagctgtacctaattcagtcatcaatggaattccaccttcgaccataaat
ggtgaagataatgataacctaacgaatcaattaagtgaattgggcattggatcagtagga
ggagcaggagtaggccatgatggaagaggttataataacgaagatgaatatgaggaaaga
gagatgttaggtgtaggtgtagaacatgcttgctcatattgtggaatacataatcctcaa
tgtgtagtcaagtgtttgcactgtagtaaatggttctgtaattctagaggaaatacatca
gcttcacatatcgtcaatcatcttgttaaagcaaaacataaagaagtagtattacacaaa
gaaagtgctctaggtgacactgtacctgaatgctataattgcggtagtaaaaatgttttc
atgttgggattcatccctgctaagagcgataccgtagtagtattactctgtcgtcaacca
tgtgcagccctgactaattcaagagatatcaattgggatacatcacaatggtcagctatt
atagacgatcgacaattcctctcatggctggtcaagatcccgtctgaagctgaacagctt
cgagcaaggcaaatttctctagctcaaatatcaaaattggaggaattgtggagagataat
ccggaggctagattagaggatgcagaagctcaatccggtgaagaagaaatgcaacctatc
ttattaagatacgaagacgcatatcaataccagaatatcttcggacctttggtgaaaatc
gaagcggattatgataagcgaatgaaagaatcacaaacagaaaatgatatcaccataaga
tgggatatgggtttgaatcaaaaacgactcgcatggttctgtatgcccaaattggaatct
ggagaagtcagattggcagtcggggatgagttgagattgaaattcgttggaatcactggt
ggaagcactggtatcaaaggaatgtcagctttcaataaaggttggggtggtggcgagagc
tgggaaggcattgggagtgtcatcaagatccccaacaatgtgtccgatgagatctgcttg
gaattacgacgaaacgatggcgtacctgccgattgtactcacggcttctcagtcgacttt
gtctggaaagctaccagtttcgataggatgcaagcggcaatgaaaacattcgctatcgac
gagaagagtgttagcggctacatttatcacaaattgttaggtcacgagctagaacctcaa
gtattacgaacccagatgcctaagcgattctcagcacccaatcttccggaactgaaccac
tctcaaatggctgcagtcaaagctgtactacagaaaccactcagtttgatccaaggacct
cctggtacaggtaaaactgtcacttccgcatctatcgtttaccatttagccaagatgaat
cctggtcaagtcctcgtttgtgctccatcaaacgtagcagttgatcatttatgcgaaaag
atccatcaaacaggtctcaaagtagtacgagtggctgccaagtctcgagaagctctagac
tcaaacgtcgcattcctctcccttcatagtcaagttgcaaatgcggatactcaccctgag
ctccaaaagctcattcagctcagaaacgatcaaggtgaattgagtcagagtgatgaaagg
aaatataagagcttggtgagagcttgtgaaaaagatgttttgaatgctgcagatgttatc
tgcaccacttgtgtcggtgctggtgatcctagattggcgaaattcaagtttagaactgta
ttgattgatgaagccacacaatcagctgaaccagaatgtatgattccccttgtcatgggt
tgtaaacaagccgtgcttgtaggagatcatcaacaattgggtcccgtcatcatgaacaag
aaagctgctcgagcaggattatcgcagtcgttgttcgaaagattggtcatcctaggtaac
cgaccgatccgacttcaagttcaatatcgaatgcacccttgtttatccgaattcccttcc
aacatgttctatgaaggtaccttacaaaatggtgttactgcacccgaaagattaaggaag
aatgtcgatttcccctggccagtaagcgatacgccaatgttcttccatcagaatttagga
acagaagaaatatcttcaagtggaacctcattcttgaatagaacagaagcgagtaacgtt
gaaaaaatggttaccaaatttttcaaatcaggtgttttaccttcacaaatcggtgtaatc
acgccatatgaaggccagagatcatacgtcgcatcatacatgcaattgcatggtagttta
aagaaagatctatacaaagaagttgaagtggcaagtgtagatgctttccaaggtagagaa
aaagattatatcatcttaagttgcgttagaagtaatgaacatcaaggtattggtttcttg
aatgatcctagaagattgaatgtcgctttgactagagcgaaatacggtgttgtgattcta
ggtaatccaaaagtcctgagcaagcacccgttgtggctttacctccttacgcatttcaaa
gagaaatcatgtttcgttgaaggtcctttgggtaatttacaacccagtatgatccagttc
tcaagacctaagaaatcattggcagcagctatggatccattcaagagacgcgagagtcct
gcaggagaatacatggacaagaatgtcggcagagttccaggtccagcagcaggaaggttt
gatccatcatactatcgtacacataacacattatcattcgttccatctgatgcacaatca
gtgatttcacaagcgataaccaattctgctttccccctattcccatctggagtcaagaat
aaatcgtatactggatacgcttcatcagtcatatcacaacaacctacgaatgacacaatt
ggactggctcctccttcttcctcagctggtgtaaaacctaataacggaataggtggaatc
ggttattcgcaattcgatagaataggtgaattaaacggacatgcaagtggaggattgaat
cttaatggagcaggtaaattaggaagacgaagtagttttggaagtgaagctgcttctgca
tcaatgtatgcttacggatataaaggtggtgataacgatgaagatggaatgagtgtcgct
ccttctcaagctgggatgacagaattctag
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integrated database retrieval system
