Kineothrix sedimenti: V6984_09675
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Entry
V6984_09675 CDS
T10997
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ksi Kineothrix sedimenti
Pathway
ksi03420
Nucleotide excision repair
ksi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ksi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
V6984_09675
03430 Mismatch repair
V6984_09675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ksi03400
]
V6984_09675
Enzymes [BR:
ksi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
V6984_09675
DNA repair and recombination proteins [BR:
ksi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
V6984_09675
MMR (mismatch excision repair)
Other MMR factors
V6984_09675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
Viral_helicase1
AAA_30
SLFN-g3_helicase
FWWh
Activator-TraM
CC_BshC
DUF3553
Motif
Other DBs
NCBI-ProteinID:
XAH76002
UniProt:
A0ABZ3F396
LinkDB
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Position
1984636..1987101
Genome browser
AA seq
821 aa
AA seq
DB search
MSIYDTLNEQQKQGVFTVDGPVLLLAGAGSGKTRVLTHRIAYLIDEFGVQPWNIMAITFT
NKAAGEMRERVNSIIGHGAEQVWVSTFHSTCVRILRRYIDRLGFDNNFTIYDTDDQKTVM
KDICKRLQIDTKMLKERTLLSAISSAKDELISPVDYQLQAMGDYNKAKIAGVYHEYQAVL
RKNNALDFDDLIVKAVELFKACPEVLESYQDRFRYIMVDEYQDTNTAQFELIRLLADKYR
NLCVVGDDDQSIYKFRGANIRNILDFEKVYAEATVIKLEQNYRSSQNVLDAANAVIRNNV
SRKDKALWTRKGEGSRIHFRQFDTAFEEAEYICDDVAKKKREGMSSYGECAILYRTNAQS
RMLEERFVVQGIPYDVVGGTNFYSRREIKDMLAYLKTIDNGRDDVAVKRIINVPKRGIGA
TTIVRVQEYADMRNISFYDALREADQIMTIGKSAAKLAPFVTMIQTFRSKLEYYSLEELM
KDVIETTGYVKELEESDDEDAEDRINNIDELISKIVSYQETHEEPNLSEFLEEVALVADI
DRIEDDGNRVLLMTLHSAKGLEFPHVYLAGMEDGVFPSYMTITSDNPEDIEEERRLAYVG
ITRAKEDLTITYAKQRMLRGETQYNPISRFVKEIPEQLLDSRLPSVRSRDYTEYEEDSYE
RSHFKAKPFGMSYMSQYGAGTAEKSGDKEVSYRRTEAEQSVFSREGASGGYQRIFDKGVS
AQSVKSKPKAIAVPKRTPAENRPFIAGGAAGSLSGVSGLSKGAPEAGTLNYGVGDRVRHI
KYGEGTVTKMEKGPRDYQVTVVFDEAGQKIMYAAFAKLKKL
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atgagtatttacgacacattgaacgaacaacaaaagcagggggttttcacggtggatggc
ccggttttgctgcttgcgggagcaggaagcggtaaaacgagggtgttgacccatagaatc
gcatatttgatcgatgaattcggggttcagccatggaatattatggcgatcacctttaca
aataaggcagcaggagaaatgcgcgaacgtgtgaacagcattatcggtcatggggcggag
caggtatgggtatccacgtttcattccacctgtgtaagaattcttagaagatacatagac
agattaggcttcgacaataattttaccatatatgatacggacgatcagaaaaccgtaatg
aaggatatatgcaagcgtcttcagattgatacgaagatgttaaaggaaagaaccttatta
agtgcaatttcctctgcaaaggatgaactgatttcccctgtcgattatcagcttcaggcg
atgggtgattataataaagcgaaaattgcaggagtctatcatgaataccaggcagtcctt
cgcaaaaataatgctctcgattttgatgatttgatcgtaaaagccgtagagctttttaag
gcatgcccggaggtacttgagagttatcaggatcgcttccgctatatcatggtggatgag
tatcaggatacgaatacggcccagttcgagcttatccgtcttttggctgataaataccgt
aatctttgcgtagtgggagatgacgatcagtccatttataagttccggggtgctaatatc
cgaaatattctggacttcgaaaaggtgtatgcggaggccaccgttatcaaactggaacag
aattatcgttctagccagaacgtgctggacgcggcgaatgccgttattcggaataacgtc
agccgaaaggataaggctctctggacgagaaagggagaaggaagcagaattcatttcaga
caattcgatacagcctttgaggaggcagaatatatctgtgacgatgtggcaaagaaaaaa
agagaagggatgtcttcctacggcgaatgtgctattctctacaggacaaatgcgcagtcg
cgtatgttggaggagcgatttgtggtgcaggggattccttatgatgtggtgggaggtacg
aacttttactccagaagagaaataaaggatatgcttgcctatttaaaaaccatcgacaat
ggcagagacgacgttgcagtgaaaagaattatcaatgtgcccaaaaggggaatcggcgct
accacaatcgttcgggtacaggaatatgctgatatgagaaatatcagcttctatgatgcc
ttgagggaagcggatcagatcatgacgataggaaagagcgctgcgaagcttgcgcctttt
gttacaatgatacagacctttcgcagcaaattggaatattatagtctcgaggagttgatg
aaggatgtcatcgagaccaccggctatgtgaaggagctggaggaatccgatgatgaggat
gcggaggacagaatcaacaatatcgatgaacttatcagcaaaatagtatcctatcaggaa
actcacgaggagccgaatctaagcgaattcctggaggaggtcgctttggttgctgatatc
gacaggatagaggacgatgggaaccgagtgcttcttatgaccttacacagcgcgaaggga
ctggaattccctcatgtgtatttagcaggaatggaggatggtgtatttccaagctatatg
accatcacttccgataatcccgaagatatcgaggaggaaaggcgccttgcctatgtagga
attacgagagccaaggaagatctgacgattacgtatgcaaagcagagaatgctgcgggga
gagactcagtacaacccaatcagccgtttcgtaaaggagataccggagcaactgctggac
agcagactgccatccgtcagaagccgggattatacggaatacgaggaggattcttatgag
cgcagtcatttcaaggcaaagcccttcggcatgagctatatgtctcaatatggagccggg
acagcagaaaaaagcggcgataaggaagtctcttatagaagaactgaggcagaacagtcc
gtcttttcaagagaaggggcgtcgggaggctaccagaggattttcgacaaaggggtgtca
gcacagtccgtcaagtcaaagcccaaagcgattgcggttcctaagcggacgcctgcggaa
aacaggccctttatagcgggaggcgccgccggaagcttaagcggcgtaagcggtttatca
aagggggcaccggaagcgggaacgttaaactatggcgtaggtgacagagtacgtcacatt
aagtatggggaaggcacggttacaaaaatggaaaaaggaccccgtgactatcaggttacg
gtggtgttcgatgaagctggacagaagattatgtatgctgccttcgcaaaattgaaaaag
ttataa
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