Kineothrix sedimenti: V6984_11000
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Entry
V6984_11000 CDS
T10997
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ksi Kineothrix sedimenti
Pathway
ksi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ksi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V6984_11000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ksi03019
]
V6984_11000
03009 Ribosome biogenesis [BR:
ksi03009
]
V6984_11000
Enzymes [BR:
ksi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
V6984_11000
Messenger RNA biogenesis [BR:
ksi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
V6984_11000
Ribosome biogenesis [BR:
ksi03009
]
Prokaryotic type
rRNA helicases
V6984_11000
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
ResIII
AAA_19
Helicase_C_2
Cas3-like_C_2
AAA_22
NAT10_TcmA_helicase
CMS1
Motif
Other DBs
NCBI-ProteinID:
XAH76253
UniProt:
A0ABZ3F125
LinkDB
All DBs
Position
2269453..2271054
Genome browser
AA seq
533 aa
AA seq
DB search
MSSTENQISYKESAIDERIIRAVEEMGFENMTPIQAQAIPVMLEGRDIIGQAQTGTGKTA
AFGIPVIQSIDVNNKALQAIVLCPTRELAIQAAEEMRRFAKYMHGVKVLPVYGGQDISRQ
IRALSGGTQIVVGTPGRVMDHMRRHTIRTGQMKIIVLDEADEMLNMGFREDIETILKDMP
TERQTALFSATMPKPILDITREYQKADAEYLKMTPKEVTIPLVKQAYYQIQRKDKEEVLC
RLMDYYHPKRSLIFCNTKRMVDELTEHLKDRGYQAEGLHGDLSQNQRDTVMNLFRSGRTD
ILIATDVAARGIDVDNVEAVFNFDVPDDIEYYVHRIGRTGRAGKTGRSFTLVVGREVFKL
REIERICHTTIKEKSVPSAADITSVKEEKVLSEVLEVMQNKKMDKTIEFLENKLAESDYT
ALELAAAFMKLKMGDDIKDIKIEKYGPRDRGFGKGKGKGSGLGVRGGEGRRRDDGKKYDG
KRYGGGKDRSKDKGFSEKRFTDKNNDKRVRKDREAPEIFKGREKSKKSRREAI
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtacagaaaatcagattagttataaagaatcggcaattgatgagagaattatt
cgagcggtagaagaaatgggattcgagaatatgacgcctattcaagcgcaggcaataccc
gttatgctggagggcagagatattatagggcaggcgcagacgggaaccggtaagaccgcg
gcgtttggaatacccgttattcagagcatcgatgtgaataataaagcattacaggcgatt
gttctttgccctacgagagagctggctattcaggcggcggaggagatgaggcgatttgcc
aaatatatgcacggagttaaggtgcttcccgtatatggcggtcaggatatttccagacag
attcgggcgcttagcggcggcacacagattgtagtaggaacccctggaagggtcatggac
catatgcgccgccatacaataaggacggggcagatgaaaattatcgtcctggatgaagca
gatgagatgttgaacatgggatttcgtgaggatatagagacgatacttaaggatatgcca
acagaaaggcagactgcacttttctcagcgacgatgcccaagccgatactggatattacg
agagaatatcagaaggcggatgcagaatatttgaagatgacgccgaaggaagtgacgata
ccattagttaagcaggcatattatcagatacagcgcaaggataaggaagaagttctttgc
cgtcttatggattactatcatcctaagcgttctctcattttctgtaatacaaaacgaatg
gtggatgaactgacagagcatttaaaagacagaggctatcaggcggaaggattgcatggt
gatttgagccagaaccagagagacaccgtaatgaatcttttcagaagcggaaggactgat
atccttatcgctacggatgtggctgccagaggaattgatgttgataacgtggaagcggta
tttaacttcgacgtgccggatgatattgaatattatgttcatcgtatcggacgtaccgga
cgtgcaggcaagacggggcgctccttcactctggtggtgggcagagaggtcttcaagctg
cgtgaaatcgagagaatatgccacactacgataaaagagaaaagtgtcccttctgcagcg
gatattacttctgtaaaagaggagaaagttctaagcgaagttctggaagtgatgcagaat
aagaaaatggataagaccatagaatttcttgaaaataagctggccgaaagcgattacacc
gcattggagcttgcggcggcctttatgaagttgaagatgggcgacgatatcaaggacatc
aaaattgagaagtacggtccgagagaccgcggcttcggtaaaggcaaaggcaagggttcc
ggtctgggcgtgcgaggcggcgaaggacgcaggagagacgacgggaagaaatacgatggt
aagagatacggtggcggtaaagacagaagcaaggataagggctttagcgagaaacgtttc
acggataaaaataacgacaaaagagtccgcaaagacagagaagcaccggaaatcttcaaa
ggaagagaaaaaagcaagaaaagcagaagagaagccatataa
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