Kineothrix sedimenti: V6984_12060
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Entry
V6984_12060 CDS
T10997
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ksi Kineothrix sedimenti
Pathway
ksi03420
Nucleotide excision repair
ksi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ksi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
V6984_12060
03430 Mismatch repair
V6984_12060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ksi03400
]
V6984_12060
Enzymes [BR:
ksi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
V6984_12060
DNA repair and recombination proteins [BR:
ksi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
V6984_12060
MMR (mismatch excision repair)
Other MMR factors
V6984_12060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
DEAD
AAA_11
ResIII
ADDB_N
Med14
Motif
Other DBs
NCBI-ProteinID:
XAH72267
LinkDB
All DBs
Position
complement(2483107..2484978)
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AA seq
623 aa
AA seq
DB search
MSDQRSNRAQAQAIEHASGPMQVLAGPGSGKTYLTIRRIRHLIRHHGISPHKILVITFTK
AAAQEMKERFLVLTGHAYPEVHFGTFHSVYYHILRQSGNSDLKLASAADKHKYLTHILRM
IKSGEENNAELYQNLLKAISAVKNLSTISGASEIIRNHGEELQQQFPYIYEEYCRIMEDE
RKIDFDDMILLCDKLLTHNSDVLTFWQNAFFHIMIDEFQDISPLQYQIIRRLSLPQNNLF
IVGDDDQSIYGFRGAGPDIMRQFMSDYGEARQLTLGINYRCTEEIVEAAQIVIEDNKNRF
AKELTANKRREGKKKEAVKISSFADKEEEHKYLMERLKEMTKEELSQSAVIYRTNAEAGA
LSRELAACNIPFYAKNNIENIFETPIAQDLFSYLSFAEAIFKKGKGGSAGGLRGDFYRIM
NKPSRYIQRQAAGEPVVTERLLLDYYNKKPHMQETVRKLWSDLSMLSALRPYLAVDYIRK
NMGYEEYLCSEKDKEKKEEIIELLAELQKSAANLRSFTEWKDYVQEYTCLLHKKESTENK
VQEGIKLLTMHMSKGLEYTRVYLPDIRKGAIPNRKALSPEAVEEERRLFYVAMTRAKEYL
EILYYGEPSPFIGKLKETLQARA
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatcaaagaagcaatagggcacaggcccaagccatagagcacgcttccggtccc
atgcaggttctcgcgggaccgggaagcggcaaaacctatcttactattcgccggattcgt
catctgattcggcatcacgggatttctccccacaaaattctcgttattacttttacaaag
gctgcggcacaggagatgaaggaacgcttcttagtacttaccgggcatgcttatccggag
gttcacttcggaacctttcattccgtatattatcatatattgaggcagtcgggaaattcg
gacttaaagctggcatcggcggcagataaacataaatatttaacacatattcttcgtatg
ataaaaagcggggaagaaaacaatgcagagctttaccaaaatctgctgaaggctataagc
gccgttaaaaacctttctacgatttccggagcatcagaaataataaggaatcacggcgaa
gagctgcaacagcaatttccatatatatacgaagaatattgccgtatcatggaggatgag
cgcaagatagatttcgacgacatgattcttctgtgcgataagcttcttacacacaattcc
gacgttcttaccttctggcaaaatgcattttttcacatcatgatcgatgaatttcaagac
atctcccctttgcagtatcagatcatacgccgtctgtcacttccgcagaacaacctgttt
atcgtgggagatgacgatcagtctatatatggttttcgaggtgcaggaccggatattatg
aggcagtttatgagcgattatggagaggccaggcagcttactctgggcattaattatagg
tgtaccgaggagattgtggaagcggcgcaaatagtcattgaggataataagaaccgcttt
gccaaggaacttacagcaaataaaaggagagaaggaaagaagaaggaggcagtaaaaatc
tcttcctttgcggataaggaagaggagcataaatatcttatggagaggctgaaggaaatg
actaaagaagagctgtcccaaagtgccgtcatttaccgcaccaatgcggaggcaggtgcg
ctgtccagagaacttgctgcctgcaatatccctttttatgcaaagaataatattgaaaat
atttttgaaacacctatagcacaggatctcttttcctacctttcctttgcggaagctatt
ttcaaaaagggaaaaggcgggagtgcaggtggtctgcggggagatttttatcgcattatg
aataagccgtccagatatatccaaagacaggcggcaggggagcctgtggttaccgagaga
ttattactggattattataataagaagccgcatatgcaggaaacggtgcggaagctttgg
tcggatttaagtatgctttcggccctgcgcccctatcttgctgtggattatattcggaag
aatatgggatatgaggaatatttgtgcagtgagaaagataaagaaaaaaaggaagaaata
atagagcttttggcagaactgcaaaaatcggcagcaaacctgcgcagcttcacggagtgg
aaggactatgtacaggaatatacatgcctgcttcataaaaaagaaagtacagaaaataaa
gtgcaggaaggaatcaagctacttaccatgcatatgtccaaaggactggaatatacgagg
gtctatcttccggacataagaaagggagcgataccgaatcgaaaagcactttcaccagag
gctgttgaggaggaacggaggcttttctatgtagctatgaccagagcgaaggaatattta
gaaatattgtattatggggaaccatccccttttatcgggaaattaaaagagactctccaa
gcaagagcctga
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