Kineothrix sedimenti: V6984_14875
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Entry
V6984_14875 CDS
T10997
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ksi Kineothrix sedimenti
Pathway
ksi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ksi00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
V6984_14875 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ksi03021
]
V6984_14875 (rpoD)
Transcription machinery [BR:
ksi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
V6984_14875 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
WHD_MCM8
DUF3231
Motif
Other DBs
NCBI-ProteinID:
XAH72785
UniProt:
A0ABZ3ETE8
LinkDB
All DBs
Position
complement(3100742..3101854)
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AA seq
370 aa
AA seq
DB search
MDENTQAKFDEHLKELLGAAKKKKNVLEYQEINDFFADMALEEEHFDKIMETLEQNNVDV
LRITEEDDVDDEEIILTEEDEVDVENIDLTVPDGISIEDPVRMYLKEIGKVPLLSAEEEI
ELAKKMEMGDDEAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYR
KGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPSPEE
IAEEMNMPVDRVREILKISQEPVSLETPIGEEEDSHLGDFIQDDNVPVPADAAAFTLLKE
QLVEVLGTLTEREQKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPS
RSRKLKDYLD
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaaacacacaagcaaagtttgatgagcatttgaaggagctcttaggcgctgct
aaaaagaaaaagaatgtactggagtatcaggagattaatgatttcttcgccgacatggcg
ctggaagaggaacatttcgataaaataatggaaactctggaacagaataacgtggatgta
cttcgcatcacggaggaggatgacgtggatgacgaggagattatcctcacggaggaggat
gaggtcgatgtggagaatatcgatcttactgttccggatggcatcagcatcgaggatcct
gtcagaatgtatctgaaggaaatcggtaaggttccccttctgagcgcagaggaggaaatc
gagctggcgaagaagatggagatgggtgatgatgaggcgaaaaagcgtcttgcggaggcg
aatcttcgtctcgttgtcagcatagccaagaggtatgtgggccgcggtatgctttttctc
gatttaattcaggagggcaatcttggccttattaaggctgtggaaaaattcgattataga
aaaggatacaaattctctacctatgcgacgtggtggattcgccaggcgattacaagagct
atagccgatcaggcgagaacgattcgaattcctgtccacatggtggagacaatcaataag
ctgattcgtgtcagcagacagctccttcaggaattgggcagagagccttctccggaagaa
atagctgaggaaatgaatatgccggtggacagggtaagagagatcctcaaaatttcccag
gaaccggtttccttggaaacccctatcggcgaagaagaagacagccatctgggcgatttc
attcaggacgataacgtgccggtccccgcggatgcggcggcttttactttattaaaggag
cagcttgtggaggttcttggcaccttgacggaaagagaacaaaaggtgcttcgccttcgc
ttcggtttggatgacggacgtgccagaacgctggaggaggtcggaaaggaattcaatgtt
accagagagcgaatcagacagatagaagcgaaagcgcttcgtaagcttcgacatcccagc
agaagccgcaagctgaaagattacttggattaa
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