Kineothrix sedimenti: V6984_17525
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Entry
V6984_17525 CDS
T10997
Name
(GenBank) endonuclease VIII
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
ksi Kineothrix sedimenti
Pathway
ksi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ksi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
V6984_17525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ksi03400
]
V6984_17525
Enzymes [BR:
ksi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
V6984_17525
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
V6984_17525
DNA repair and recombination proteins [BR:
ksi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
V6984_17525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
NFACT_N
Zn_ribbon_6
zf-FPG_IleRS
Zn_ribbon_TFIIB
HscB_4_cys
Motif
Other DBs
NCBI-ProteinID:
XAH73285
LinkDB
All DBs
Position
complement(3630284..3631108)
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AA seq
274 aa
AA seq
DB search
MIEIPESLTLAKQLTDTVKGKKIAEVETGHTKHSFAWYTDDPQEYAGKLQGKTVGEIHGI
GSMVEMEAEDYRFTVGDGTNIRYFEKGEKLPERYQMRITFEDESSLICTVQMYGSMFLFR
SGEYDNFYYLVAKEKPMPGTEGFDYPYFQSLREELSGKLSAKAMLATEQRIPGLGNGVLQ
DILLEAGIHPKQKIGSLREVDWKRLYTAVSNVLREMTEKGGRDTEKNLFGQAGGYRTKLS
KKTLGGPCPYCGNPIQKTAYLGGTVYFCSQCQRA
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgatagagataccggaaagtctaacgttggcaaagcaactgaccgatacggtcaaagga
aagaaaatagcggaggtagagaccgggcatacgaagcattcctttgcttggtataccgac
gatccgcaggagtatgccggaaagcttcagggaaagaccgtaggagaaatccatgggatc
ggaagcatggtggagatggaagcggaggactacaggtttacggtgggagatggaacaaat
ataaggtattttgaaaagggagaaaagcttcccgaaagatatcagatgaggataaccttt
gaggatgaaagctctctcatatgtacagtccagatgtatggttcgatgtttctgtttcgg
tcaggggaatacgataatttttattatcttgtggcgaaggagaagcccatgcccggaacg
gaaggcttcgattacccgtatttccaatcgctaagagaggagttgagcgggaagctttcc
gcaaaggcgatgctcgctaccgagcagaggattccgggacttggcaacggcgtactgcag
gacatccttctggaggccggaatccatccgaaacagaaaatcggcagtctgcgcgaagtg
gattggaagcgtttatatacggcagtttcgaatgttcttcgggagatgacggaaaagggc
ggaagagatactgagaaaaatctcttcggacaggccggaggataccgcactaagctcagt
aagaagacacttggaggtccatgtccatattgcggtaatcccatacagaagacggcttat
ctgggaggaacggtatatttttgttctcagtgccagcgggcttga
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