Kineothrix sedimenti: V6984_20400
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Entry
V6984_20400 CDS
T10997
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
ksi Kineothrix sedimenti
Brite
KEGG Orthology (KO) [BR:
ksi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ksi03009
]
V6984_20400 (rlmD)
Enzymes [BR:
ksi01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
V6984_20400 (rlmD)
Ribosome biogenesis [BR:
ksi03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
V6984_20400 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
MTS
Methyltransf_15
Cons_hypoth95
PrmA
TRM5-TYW2_MTfase
Methyltransf_11
Methyltransf_12
Ubie_methyltran
PCMT
Methyltransf_4
UPF0020
AWS
Motif
Other DBs
NCBI-ProteinID:
XAH73837
LinkDB
All DBs
Position
complement(4307722..4309137)
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AA seq
471 aa
AA seq
DB search
MEYKKNDILTVTIEDMGSDGEGIGKVDGYTLFIKDAVIGDVVICKIMKAKKNYAYAKLEK
VTEPSVSRVTPVCRYHKQCGGCQLQAMSYEAQLEYKQNKVRNNLIRIGGFDKELVDRIME
PIVGMENPYHYRNKAQFPVGTDKDGNLITGFYAGRTHDIIANTDCALGVKENRQILEAVL
RYMKESSVTAYDEKTGKGIVRHILIRKGFASEEIMVCLIINTLKPLPVKGRLIELLRETP
GMTSVSISINTERTNVIMGKEVRTIWGKDTITDTIHVRNTSDFSLTDKAISFHISPLSFY
QVNPLQTEKLYSLALEYAGLTGRETVWDLYCGIGTISLFLAGSAKRVCGVEIVPQAIEDA
RKNAEFNGITNVEFFAGKAEEVLPEKYEQEGIRADVIVVDPPRKGCDEACLNTMLKMQPQ
RIVYVSCDSATLARDLKVLCDGSYEIVRGRAVDQFGGTVHTEVVVLLQRNG
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atggaatataaaaagaatgacattcttacggtgacaattgaagatatgggcagcgatgga
gagggtataggtaaggttgacggctataccctttttataaaggatgcggttatcggagat
gtggtaatctgtaagattatgaaagcgaagaaaaactacgcgtatgctaagctggagaag
gtaacggagccttctgtatcccgcgttaccccggtctgcaggtaccataagcagtgcggc
ggctgccagctccaggccatgagttatgaagctcagctcgaatacaagcagaacaaggtg
agaaacaacctcataaggatcggcggatttgataaggagcttgtggatcgcatcatggag
cctatcgtcggtatggagaatccatatcattataggaacaaggctcagtttccggtagga
acggataaagacgggaatttgattacggggttttatgcaggaaggacccatgatattatt
gctaatacggattgtgctcttggggtgaaggagaaccggcaaatattggaggcggttctt
cgatacatgaaggaaagcagtgtaacagcttatgatgagaagacaggaaaaggaatcgta
aggcacattttaatccgcaagggatttgcaagcgaagaaatcatggtgtgccttataatc
aatacgctgaaaccacttccggtgaaaggacggctgatcgaattgctgcgggaaactccg
ggaatgacaagcgtgtcgataagtatcaatacggagcgcaccaacgtgatcatgggaaaa
gaagtgcgcaccatatgggggaaggataccataaccgatacaattcacgtgagaaatact
tctgatttctccctgacggataaagcgatttcttttcatatatcgcctttatctttttat
caggtaaatccgctgcagacagagaagctttacagcctcgcattagaatatgccggactt
accggcagggagaccgtatgggacttatactgtggtattggaacgatttcgctgtttctc
gccggaagtgcaaagcgggtctgcggagtggaaatagtgcctcaggcaatcgaagatgcc
agaaagaatgctgaatttaacggaatcacaaatgtggaattctttgcggggaaagcggaa
gaggtacttcccgagaaatatgaacaggaaggaatccgcgccgatgtcatcgtggtcgat
cctccgagaaagggctgtgatgaagcctgcctcaatacgatgctgaagatgcagccgcag
cgcatcgtctacgtaagctgcgattccgccactctggcccgggacctgaaggtgttgtgt
gacggaagttatgaaattgtgagggggagagcggtggatcagtttggagggacggtgcat
acagaggttgtagtcttactgcaacggaatgggtaa
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