Kineothrix sedimenti: V6984_20510
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Entry
V6984_20510 CDS
T10997
Name
(GenBank) 3'-5' exonuclease
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ksi Kineothrix sedimenti
Pathway
ksi03420
Nucleotide excision repair
ksi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ksi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
V6984_20510
03430 Mismatch repair
V6984_20510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ksi03400
]
V6984_20510
Enzymes [BR:
ksi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
V6984_20510
DNA repair and recombination proteins [BR:
ksi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
V6984_20510
MMR (mismatch excision repair)
Other MMR factors
V6984_20510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD_C
UvrD-helicase
UvrD_C_2
AAA_19
DEAD
Viral_helicase1
AAA_30
SLFN-g3_helicase
nSTAND3
T2SSE
Mg_chelatase
ResIII
NACHT
Motif
Other DBs
NCBI-ProteinID:
XAH73858
LinkDB
All DBs
Position
complement(4334079..4337171)
Genome browser
AA seq
1030 aa
AA seq
DB search
MNQKGRTKRLPGVTLEEETKMLSDIIAIADENLNRTKAVVQNLADELHELKEVYDVEDKE
GLALWFNTDARFQQVRQELLRMERSRKKPYFGRIDFRDRNLLKQECYYIGKSAISKEAAD
LIVIDWRAPIASVYYEKSLGVCTYSVKGEGAFEIDLSRKRTYEIENDRLKDFFDSDVVAN
DELLTKYLARNKRAVLSEIIATIQQEQNEIIRKKPQHNVIVQGGAGSGKTTVAMHRISYI
LYNYDLEFKPKDFYIIGSNRILLNYITGILPDLDVYGASQMTMEQLFIRLLYEDWDEQKF
TLKSLDKGDKTACVKGSFSWFHDLEDFCERYEWNYIPREDIFAEKTRHLLMSRAMIEKLL
KEFHFLSLPDKLDKLTEHLMAKVENEIYGKYHTYPLEEQKALLRYYQTYFGKREWKGSIF
ELYGDFLREQNVKRNMNLLSGTEFDLYDLAALSYLYKRIKETEVIQEASHVVIDEAQDFG
MMVYGALKYCLSKCTYTIMGDVSQNIYFDYGLTDWEELRSLMLPGEFDYFGILKKSYRNT
VEISNFAINILQHGNFPIYPVEPIIRHGSEVRTTRCEDEGQLVLETVGTILQWQEKEYET
IAVICRDEEEAVKVSEKLRKRVAIRDFNSETEEFGSGVMVLPIEYAKGLEFDAVLLFNAD
DKNYPAEDGFAKLLYVAATRALHEMVVLYSGRLTDLIGAPVSEEKKLKYLKEQPKPIAPS
QFESQPKTKKELELELALDGKREMELRNRIGPRRIVVQNSGNEKSSENIQAKAPARIRQK
VREESGSGDMVRKAVVRKAAIGRTGVGEFGGMPGTTSLRPPGHSNINLSVRWVTGNKSYL
ELTNACGVLRLTPITQDTIRVSFARETLEKLADIPKEIVTQPSPVWNFKESRDRVELMTG
KLLLRIDKKTGAISFCTAKEKQLLSESIRLPRQIEKLPGNQTWTYFNWTSKEILKARGGS
DNEWLDLKDTARYISFGAESERPACIISNNGYQILIPAGRRVMCCTLPVYGSYLYTEGEK
QIDYFFRTAL
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atgaatcagaaaggtcggacgaaaagattgccgggagttaccctggaagaagaaacaaaa
atgctttcagatattattgctattgcagacgagaatttgaaccggacaaaagcagttgtt
cagaatctggcagatgagctgcatgaattgaaggaagtatatgatgtggaagataaagaa
ggtttggcgctgtggtttaatactgatgccagatttcagcaagtcaggcaggaactgctc
cgcatggagcgcagcaggaaaaagccgtattttggaagaattgattttagagatagaaat
ctgttgaagcaggagtgttattatattggaaagtctgcgatcagcaaagaagccgcagat
ttgattgtcattgactggagagcaccgattgcatctgtttattatgagaaatctctcgga
gtatgtacatactccgtaaaaggagaaggagcatttgagatagatctttccagaaaacgt
acctatgaaatagaaaatgatagactgaaggacttttttgattctgatgtagtggcaaat
gacgagttgctgacaaaataccttgccagaaataagcgggccgttttaagcgagataatc
gccacgattcagcaggaacaaaatgagattattcgtaagaagccacagcacaatgttatt
gtacagggcggagccggttctggtaaaacaacagtggcgatgcatcgcatttcttatatc
ctgtataattacgacttggaattcaaaccaaaggatttctacattattggcagtaaccgc
atcctcctgaactatatcacgggtattttgccggacttggatgtttacggggcttcgcag
atgacgatggaacagctttttatacggcttctgtatgaggactgggatgaacagaagttt
acgttaaagagcctggacaagggagacaaaacggcctgtgtaaaaggcagtttttcctgg
ttccatgatttagaagatttttgtgagagatatgagtggaattatattccgcgggaggat
atctttgcagaaaaaacccgtcatctattgatgagccgggccatgattgaaaagctgctt
aaggagtttcattttttatcgcttccggacaaactggataagctgaccgagcaccttatg
gcaaaagtggaaaatgagatatatggaaaataccatacctatccgctggaagagcagaag
gcgcttcttcggtattatcagacatattttggaaaaagagagtggaagggttctattttt
gaattgtacggcgactttttgcgtgaacaaaatgtgaagagaaacatgaatttgttatcc
ggaacagagttcgatctttatgatctggcagcactttcttatttgtacaaacgaatcaag
gagacggaggtaatccaggaagcaagtcacgttgtgatcgatgaggctcaggattttggt
atgatggtatatggagcgttaaaatattgccttagtaaatgtacctataccattatgggt
gatgtgtctcagaatatttacttcgattacggactgacagactgggaggaattgagaagt
cttatgcttcccggagagtttgattattttgggatcctgaagaaaagttaccgcaatacg
gtggaaatctcaaattttgcgatcaatatccttcaacatggaaactttcccatatatccg
gttgaaccgatcatccggcacggaagtgaagtccggactacaagatgtgaggatgaagga
caactggttttggagactgtaggcacgattttgcaatggcaggaaaaggaatatgaaaca
attgcggttatttgcagagatgaagaggaagcggtaaaagtatcggaaaaactgaggaaa
agagtggcgatccgcgactttaattctgaaacggaggagtttgggagcggtgtaatggtt
cttccgatagaatatgccaagggattggaattcgatgccgtccttctatttaatgcggac
gataagaactacccggccgaagatggctttgcaaaactgctatatgttgcagctacgaga
gcgctgcatgaaatggtggtactttattcgggaaggctgacggatttgattggagctccg
gtatcggaagagaagaagctgaaataccttaaggagcagccaaaacccattgctccgtcc
caattcgagagtcaacctaagaccaaaaaggagcttgagttggagctggcattggatggg
aagcgcgaaatggaactccgtaaccggattggccccagaagaattgtggtgcagaattcg
ggaaacgagaagtcttctgagaatatacaagcaaaagcccctgcgagaatacggcagaaa
gtccgggaggagtccgggagcggagacatggtaagaaaagccgtcgtaagaaaggcggca
ataggaaggacgggggtaggagagttcggcgggatgccgggtaccaccagcttaagaccg
ccaggtcattctaatattaatttgtctgtacgatgggtaacaggtaataaaagctatctt
gagctgactaatgcctgcggagtgcttcggcttacgccgattacacaagataccatccgg
gtcagctttgcgagggagacgctggaaaagcttgcggatattccgaaagaaattgtgacg
cagccaagccccgtctggaattttaaggaatcaagggaccgggtagagctgatgaccgga
aagctgcttctgcgcattgataagaaaacaggtgcaatctctttttgcacggcaaaagaa
aagcaacttctttcggaaagtatccggcttccgagacagatagagaaattacccgggaat
caaacatggacttattttaactggacctcaaaagaaatattgaaagcaagaggcggatcc
gacaatgagtggcttgacctcaaggatacggcaagatatatttctttcggcgcagaatcc
gaaagacctgcctgtattatctcgaacaacggatatcaaatactgattccggcaggcaga
cgggtaatgtgctgtacattaccggtgtatggttcttatttatacacagagggtgaaaaa
cagatagattattttttccggactgcattataa
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