Kitasatospora setae: KSE_41630
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Entry
KSE_41630 CDS
T01648
Symbol
hrpA
Name
(GenBank) putative ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ksk
Kitasatospora setae
Brite
KEGG Orthology (KO) [BR:
ksk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ksk03019
]
KSE_41630 (hrpA)
Enzymes [BR:
ksk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KSE_41630 (hrpA)
Messenger RNA biogenesis [BR:
ksk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KSE_41630 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
HA2_N
AAA_22
nSTAND3
AAA_16
T2SSE
NACHT
VMAP-M8
ResIII
AAA_30
NTPase_1
PhoH
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
BAJ29949
UniProt:
E4MZL5
LinkDB
All DBs
Position
complement(4623165..4627130)
Genome browser
AA seq
1321 aa
AA seq
DB search
MSSPVAPQPAPTFAELAARLPGVMLRDAQRLGRRLEGTRKVRSAEGRQQALTGLAADFDR
SEARVASRRAAVPVIRYPQELPVAQKKDEILAAVRDHQVVIVAGETGSGKTTQIPKICLE
LGRGVQGLIGHTQPRRIAARTVAERVAEELDTPLGEAVGWKVRFTDQAGQDTLVKLMTDG
ILLAEIQTDRDLRQYDTLIIDEAHERSLNIDFLLGYLKQLLPRRPDLKVVITSATIDPER
FAAHFGDAPIIEVSGRTYPVEVRYRPLVDDEDPEDEDGGDRDRDRDQIQGICDAVEELQA
EGPGDILVFLSGEREIRDTADALTKLKLRSTEVLPLYARLSSAEQHRVFQRSSQRRVVLA
TNVAETSLTVPGIKYVIDPGTARISRYSHRTKVQRLPIEAVSQASANQRKGRCGRTSDGI
CVRLYSEEDFLSRPEFTDPEILRTNLASVILQMTAAGLGDIAAFPFLDPPDSRNIKDGVN
LLHELGALDPDEKDHRKRLTGLGRKLAQLPVDPRMARMVLEADRLGCVRDVMVIAAALSI
QDPRERPAEKRQAADDRHRRFQSETSDFLSYLSIWRYVREQQKELSSSAFRRMCKSEFLN
YLRIREWQDVYVQLRTIAKQLGVTIDEPLDDAEPDADRIHQALLSGLLSHLGLFDVEKRE
YAGARGARFAVFPGSGLFKKPPRWVMSAELVETSRLWARINAKIEPEWVEPLAAHLIKRT
YSEPHWEKKAGAVLAYERVTLYGLPVVAQRKVNYGRIDPELCRELFIRTALVEGDWETHH
RFFAENRKLLDEVEELENRARRRDILVDDQTLFDFYDARLPADVVSGRHFDSWWKKARHD
RPDLLNFEKSMLINDSADGIAEDDYPDFWQQGKLRFPLTYQFEPGSDADGVTVHIPLAVL
NQVVSEGFDWQIPGLRAELVTAWIRSLPKAVRRNFVPAPDYARAAMRELTDRQEPLLPTL
ERVLHRMSGLPIPPEAWDEERIPDHLKVTFRVVDGKRKLAESKDLEELRLKLQPKLSETL
SSAASGRGIERTGLTAWPADLPVLQRTFEQRSKGHSLRAYPALVDEGTTVGIKLFDTPEA
QQRAMWAGTRRLLMLQVNSPAKSIQGRLGNQAKLALSYNPHGSIPALFEDVVAAATDRLM
ALNGGVVWDAEAFGALYDKVRADLYELSADTTLKTATALIAFHKASTRLKSVSSPVLLSA
VNDVRLHLASLVHPGFVTATGWSRLGDLKRYLLAVDRRLEALPNHPQRDLQNLVKVQAVQ
QAYGELLAKVPAGREPSPEVKAVRWMIEELRVSFFAQGLGTPSPVSEKRILKAMEAAAAT
L
NT seq
3966 nt
NT seq
+upstream
nt +downstream
nt
gtgagttctcccgtagccccgcagcccgcccccacgttcgcggagctggccgcccggctg
cccggcgtgatgctgcgcgacgcgcagcgcctcggccgccgcctggagggcacccgcaag
gtcaggtcggccgagggccggcagcaggcgctgaccgggctggccgccgacttcgaccgc
tccgaggcccgggtggcgtcccgccgggccgcggtgccggtgatcaggtacccgcaggag
ctgccggtcgcgcagaagaaggacgagatcctggccgccgtccgcgaccaccaggtggtg
atcgtggcgggcgagaccggctccggcaagaccacccagatcccgaagatctgcctggag
ctgggccgcggcgtgcagggcctgatcggccacacccagccgcgccggatcgccgcccgc
acggtcgccgagcgggtcgccgaggagctggacaccccgctgggcgaggcggtcggctgg
aaggtcaggttcaccgaccaggccggccaggacaccctggtgaagctgatgacggacggc
atcctgctggccgagatccagaccgaccgggacctgcgccagtacgacaccctgatcatc
gacgaggcgcacgagcgcagcctgaacatcgacttcctgctcggctacctcaagcagctg
ctgccccgccgccccgacctcaaggtcgtcatcacctcggcgaccatcgacccggagcgg
ttcgccgcgcacttcggcgacgccccgatcatcgaggtctccggccgcacctacccggtg
gaggtccgctaccggccgctggtcgacgacgaggaccccgaggacgaggacggcggcgac
cgggaccgcgaccgggaccagatccagggcatctgcgacgccgtcgaggagctccaggcc
gagggcccgggcgacatcctggtgttcctctccggcgagcgcgagatccgcgacaccgcg
gacgcgctgaccaagctgaagctgcggtccaccgaggtcctcccgctctacgcccggctc
tcctcggccgagcagcaccgggtcttccagcgctcctcgcagcgccgggtcgtgctggcc
accaacgtcgccgagacctcgctgaccgtccccggcatcaagtacgtgatcgacccgggc
accgcccggatctcccgctacagccaccgcaccaaggtccagcggctgccgatcgaggcg
gtcagccaggccagcgccaaccagcgcaagggccgctgcggccgcacctcggacggcatc
tgcgtccggctgtactcggaggaggacttcctctcccgtcccgagttcaccgaccccgag
atcctgcgcaccaacctggcctcggtgatcctgcagatgacggcggcgggcctgggcgac
atcgccgccttcccgttcctcgacccgccggactcccggaacatcaaggacggcgtcaac
ctgctgcacgagctgggcgccctcgacccggacgagaaggaccaccgcaagcggctgacc
gggctgggccgcaagctcgcccaactgccggtcgacccgcggatggcccggatggtgctg
gaggccgaccgcctcggctgcgtccgggacgtgatggtgatcgccgccgcgctctccatc
caggacccgcgcgagcgcccggccgagaagcggcaggccgccgacgaccggcaccgccgc
ttccagtcggagacctccgacttcctgtcctacctgtcgatctggcgctacgtgcgggag
cagcagaaggagctgtcctcctcggcgttccgccggatgtgcaagtccgagttcctgaac
tacctgcggatacgggagtggcaggacgtctacgtccagctgcgcaccatcgccaagcag
ctcggcgtgacgatcgacgagcccttggacgacgccgagccggacgccgaccggatccac
caggcgctgctctccggcctgctctcccacctcggcctgttcgacgtggagaagcgcgag
tacgcgggcgcccgcggcgcccggttcgcggtgttcccgggttcggggctgttcaagaag
ccgccgcgctgggtgatgtcggccgagctggtggagacctcccggctgtgggcgcggatc
aacgcgaagatcgagccggagtgggtggagccgctggcggcgcacctgatcaagcgcacg
tacagcgagccgcactgggagaagaaggccggcgcggtgctggcgtacgagcgggtgacc
ctgtacgggctgccggtcgtcgcccagcggaaggtcaactacggccggatcgacccggag
ctgtgccgggagctgttcatccggaccgcgctggtggagggcgactgggagacccaccac
aggttcttcgccgagaaccgcaagctgctcgacgaggtcgaggagctggagaaccgggcc
cgccgccgggacatcctggtcgacgaccagaccctgttcgacttctacgacgcccggctg
cccgcggacgtcgtctccgggcggcacttcgactcctggtggaagaaggcccggcacgac
cggcccgacctgctgaacttcgagaagtcgatgctgatcaacgactcggcggacgggatc
gccgaggacgactacccggacttctggcagcagggcaagctgcgcttcccgctgacgtac
cagttcgagccgggcagcgacgcggacggcgtgacggtgcacatcccgctggcggtgctg
aaccaggtggtgtcggagggcttcgactggcagatcccgggcctgcgcgccgagctggtg
acggcctggatccgctcgctgccgaaggcggtgcgccgcaacttcgtccccgccccggac
tacgcccgggcggcgatgcgcgagctgaccgaccggcaggagcccctgctgccgacgctg
gagcgggtgctgcaccggatgtcgggcctgccgatcccgccggaggcgtgggacgaggag
cggatcccggaccacctgaaggtgaccttccgggtggtggacggcaagcggaagctcgcc
gagtccaaggacctggaggagctgcggctgaagctccagccgaagctgtccgagacgctg
tccagcgccgcgtccggccgcggcatcgagcgcaccggcctgaccgcctggccggccgac
ctgccggtcctgcagcgcaccttcgagcagcgctccaagggccactcgctgcgcgcctac
ccggcgctggtggacgagggcacgacggtcggcatcaagctgttcgacaccccggaggcc
cagcagcgggcgatgtgggcgggcacccgccggctgctgatgctccaggtcaactccccg
gccaagtcgatccagggccggctgggcaaccaggcgaagctcgccctgtcgtacaacccg
cacggctcgatcccggccctgttcgaggacgtggtggcggcggcgaccgaccgcctgatg
gcgctgaacggcggcgtggtctgggacgcggaggcgttcggcgcgctgtacgacaaggtc
cgggcggacctgtacgagctgtcggcggacaccacgctgaagacggcgacggcgctgatc
gccttccacaaggcgtccacccggctgaagtcggtctccagcccggtgctgctgtccgcg
gtgaacgacgtccggctgcacctggcctcgctggtgcacccgggcttcgtgaccgccacc
ggctggtcgcggctgggcgacctgaagcgttacctgctggcggtggaccgccggttggag
gcgctgcccaaccacccgcagcgcgacctgcagaacctggtgaaggtacaggccgtgcag
caggcgtacggggagctgctggcgaaggtgccggccgggcgggagccgtcgccggaggtg
aaggcggtccgctggatgatcgaggagctgcgggtgagcttcttcgcccagggcctcggc
acgccgagtccggtgtcggagaagcggatcctgaaggcgatggaggccgcggcggccacc
ctctga
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integrated database retrieval system
