Kribbella soli: OG809_24005
Help
Entry
OG809_24005 CDS
T09724
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ksl
Kribbella soli
Pathway
ksl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ksl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OG809_24005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ksl03019
]
OG809_24005
03009 Ribosome biogenesis [BR:
ksl03009
]
OG809_24005
Enzymes [BR:
ksl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
OG809_24005
Messenger RNA biogenesis [BR:
ksl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OG809_24005
Ribosome biogenesis [BR:
ksl03009
]
Prokaryotic type
rRNA processing factors
OG809_24005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
WUJ68168
LinkDB
All DBs
Position
4825150..4828650
Genome browser
AA seq
1166 aa
AA seq
DB search
MLDNEPTTEAADTAATAQPTASTRRTAKKAPAAKKTTTTRKRTVKTASEDGAAVPTQSDA
QTADPAPAPAKKAAAKKTAAKKTTAKKAAAKAPAKKTARAAKTAEQDIFPQFVPDDAPET
AAAAPAKKTTRKRTAKKAAAPDLLSAESSVTDGPVADAETSAPAADAPARKRTSRRRTSK
TAEPIATADADSGAADTDSAVTDGGSADRSGSARSRNTSADRSGSATPSGASSDHSGSSS
DGAEAPAEESGTRRTRRRAAAPAAVLFQAPTGGPQQAAPQQAEQAATVEATSDATPEPGT
DEQPTSNRRRRSRRNRDAEARETEVAEETTEAAQPQASATDTPAEDTGRSTGRTRTRSAR
KTTETAGTTAAGATATSTDLDTETDEADEESADVTDAQSEDGEEGGEGTRRRRRRRGGRR
RRKSGDGADDNADDQSDDEDEPDTQDTDQDADASDDGDQDGAADSDEDGEAGSSSRRRRR
RRRRKGEDSGAASPDDPDETVVRVREPRSKTVNNEITAVEGSTRLEAKKQRRREGRAAGR
RRAPIVTEAEFLARRESVERTMVIRSRDDLTQIAVSEDNVLVEHYVTTAEQTSLIGNVYL
GRVQNVLPSMEAAFIDIGKGRNAVLYAGEVDWATLGGANGPRKIEQVLKSGQAVLVQVTK
DPIGHKGARLTNQISLPGRYVVYVPRGGNGGISRKLPDTERNRLKTILKDIVPDEAGVIV
RTAAEGASEEELTADVSRLQSAWEDIDKKSKNGQAPQLLYGEPDLLIRVVRDLFTEDFAK
LVISGDRAYEQVREYVAGVAPHLADRVEKWGGDGDVFASYRIDEQIKKALDRKVWLPSGG
SLIIDRTEAMTVVDVNTGKFTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFI
DMVLESNRDLVLRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRIGTGLLEAFSENCDHCG
GRGLILHDEPKESRRRDGRNGQGGNGNGQSNGQSNGNGSSNGNGNGQDHAKSAPAEEGGR
KSSRRRRGKGRGEDEAVEPTAAETAQHNADAAQRLAQIAAASAKKDDEHGTPEPTGYPIS
ADADEHVSPEATGFPADTAQATTVISDAAESTGAEASAGEAADPADAAQNGATKSTRRRR
SSRSRSKTATEGEGVEQSETLVTTGS
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgctcgacaacgagccgaccaccgaggcagccgacacggctgccaccgcccagcccacc
gcctccacccgcaggaccgcgaagaaggcgccggctgccaagaagaccaccaccacgcgg
aagcgcacggtgaagaccgcctccgaagacggcgccgcggtcccgacccagtccgacgcg
cagaccgccgatccggcgcccgcgccggccaagaaggcggcagccaagaagactgccgcg
aagaagaccacggccaagaaggccgcggcgaaggctccggccaagaagacggcccgcgcc
gccaagaccgctgagcaggacatcttcccgcagttcgtccccgacgacgcgccggaaacc
gcagctgcggctcccgcgaagaagaccacccgcaagcgcaccgccaagaaggccgcggcg
ccggacctgctgtcagcagagtcttcggtcaccgacggcccggtggccgacgccgaaacc
agcgcgccggccgcggacgcccccgcccgcaagcgcacctcccgccgccgtacgagcaag
accgccgagcccatcgcgaccgccgacgccgactctggcgcagctgacaccgactctgcc
gtgaccgacggcggctccgcggaccgctccggttccgcccggtcccgcaacacctctgct
gaccgctccggctcggcgacgccttccggcgcgtcgtcggaccactccggcagctcctct
gacggcgctgaggcgccggctgaagagtcgggcacccgccgtacccgtcggcgtgcagcc
gcccccgcggccgtgctgttccaggcgccgaccggcggcccccagcaggccgcaccccag
caggccgagcaggccgcgacggttgaagcgacctccgatgcgaccccggagcctgggacc
gacgagcagccgaccagcaaccgtcgtcgccgcagccgtcggaaccgtgacgccgaggcc
cgcgagacagaggtagccgaggagaccaccgaggccgcccagccgcaggcaagcgccacc
gacacccccgctgaggacactggcaggtccaccggacggacccggacccggtccgccagg
aagaccaccgagaccgccggcacgaccgccgcaggcgcaaccgcgaccagcacggacctc
gacaccgagaccgacgaggcggacgaggagtccgcggacgtcaccgacgcacagtccgag
gacggcgaggaaggtggcgaggggactcgccgtcgccgtcgccgccgcggtggccgtcgt
cgtcgcaagtccggtgacggcgcagacgacaacgccgacgaccagtccgacgacgaggac
gagcccgacacccaggacaccgaccaggatgccgacgcgtccgacgacggcgaccaggac
ggtgcggccgactccgacgaggacggcgaggcaggcagctcgtcccggcgtcgccgccgt
cgccgtcgccgcaagggcgaggacagcggcgccgcgtccccggacgaccccgacgagacc
gtcgtacgggtccgtgagccgcgcagcaagactgtcaacaacgagatcaccgcggtcgag
ggttcgacccgtctcgaggcgaagaagcagcgccgccgcgagggtcgcgccgccggccgc
cgccgcgcgccgatcgtcaccgaggccgagttcctggcccgtcgcgagtcggtcgagcgg
acgatggtcatccggtcccgcgacgacctgacccagatcgcggtctccgaggacaacgtc
ctggtcgagcactacgtgaccaccgccgagcagacgtcgctgatcggcaacgtctacctc
ggccgcgtgcagaacgtgctgccgagcatggaggccgcgttcatcgatatcggcaagggc
cgcaacgcggtcctgtacgccggtgaggtggactgggcgacccttggtggcgccaacggt
ccgcgcaagatcgagcaggtgctgaagtccggtcaggcggtcctggtccaggtgaccaag
gacccgatcggccacaagggcgcccggctcaccaaccagatcagcctccccggccggtac
gtcgtgtacgtgccgcgcggcggcaacggcggtatcagccgcaagctgcccgacaccgag
cggaaccggctgaagacgatcctcaaggacatcgttcccgacgaggccggcgtgatcgtc
cggaccgccgcggaaggcgcctcggaggaggagctgaccgccgacgtcagccgcctgcag
tccgcctgggaggacatcgacaagaagtccaagaacggccaggccccgcagctgctgtac
ggcgagccggatctgctgatccgcgtcgtccgcgacctgttcaccgaggacttcgcgaag
ctcgtcatctccggcgaccgtgcgtacgagcaggttcgtgagtacgtcgccggcgtcgcg
ccgcacctggccgaccgggtcgagaagtggggcggggacggcgacgtcttcgcgagctac
cggatcgacgagcagatcaagaaggcgctggaccgcaaggtctggctgccgtcgggcggc
tcgctgatcatcgaccggaccgaggcgatgaccgtcgtcgacgtcaacaccggcaagttc
accggctccgggggcaacctcgaggagaccgtcaccaagaacaacctggaagcggccgag
gagatcgtccgccagctccggctgcgtgacatcggcggcatcatcgtcatcgacttcatc
gacatggtgctcgagtcgaaccgcgatctcgtactgcgccggctggtcgagtgcctgggc
cgcgaccggaccaagcaccaggtcgccgaggtcacctcgctcggcctggtccagatgacc
cggaagcggatcggcaccggcctgctggaggcgttcagcgagaactgcgaccactgcggt
ggccgcggcctgatcctgcacgacgagccgaaggagtcccgccgccgcgacggccgcaac
ggccagggcggcaacggcaacggccagagcaacggtcagagcaacggcaacggcagctcg
aacggcaacggcaacggtcaggaccacgccaagtccgcgccggcggaggagggcggccgg
aagagctcgcgccgccgccggggcaagggccgcggcgaggacgaggccgtcgagccgacg
gcggccgagaccgctcagcacaacgccgacgcggcccagaggctcgcgcagatcgccgcc
gcttccgcgaagaaggacgacgagcacggtactccggaaccgaccggctacccgatctct
gccgacgccgacgagcacgtcagccccgaggcgaccggcttcccggccgacacggctcag
gcgacgaccgtgatcagcgacgccgcggagtccaccggcgccgaggcttcggcgggcgag
gcggccgacccggccgacgccgcccagaacggcgccaccaagagcacccggcggcggcgc
agcagccgcagccggagcaagaccgctaccgagggtgaaggcgtggagcagtccgaaacg
ctcgtcaccaccggcagctaa
DBGET
integrated database retrieval system
