Kwoniella shandongensis: 43585341
Help
Entry
43585341 CDS
T11156
Symbol
CI109_102850
Name
(RefSeq) uncharacterized protein
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
ksn Kwoniella shandongensis
Pathway
ksn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ksn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
43585341 (CI109_102850)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ksn03019
]
43585341 (CI109_102850)
Messenger RNA biogenesis [BR:
ksn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
43585341 (CI109_102850)
U7-dependent histone pre-mRNA processing factors
43585341 (CI109_102850)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
DUF4636
Motif
Other DBs
NCBI-GeneID:
43585341
NCBI-ProteinID:
XP_031864130
UniProt:
A0A5M6CBM6
LinkDB
All DBs
Position
5:complement(join(432657..433229,433296..433484,433540..433686,433758..434243,434297..434588,434643..435018,435071..435190,435253..435405,435464..435804,435877..436046))
Genome browser
AA seq
948 aa
AA seq
DB search
MITLTPLSSSAAASSSSEPVCYLLELDEAKILLDMGQTDYRASAQRTSWEYEEKVRELAP
TLSLVLLSHSPTTYLSLYPYARARWGLTCPVYATQPTVEMGRVVCLSEVESWRSECKVEA
VEDDQGEVEGKKLDKGKKPLRGPFVPTVEEVHEAFDWIKAIRYNQPLHLGGDLAHLLLTP
FPSGHTLGGTLFKLRSPTSGTVLYAVGINHTSERHLDGMVGAQNGPSGYAEGVMRPDLLI
VEGGRSLVTNPKRRERETALLDLVTSTLESNHSVLLPSDPSPRLLELLILLDQHWTFKLN
TQTKRRPGIPQPPPGEAWPYPLCIVSRTAQDMVAFARSLIEWMGGVVKESGGEEVVTDMS
GKRGKKGKRGRGAGATLGSEYGALDFRHVQFFLNPMDLLHAYPLMRPKLILAIPPTMSHS
PSRFLFTALANTEGNVILLTTRGEDRTLARELYDQWEASQDENAKWGQGKIGSLQPLYGQ
LKVEMDSKVALTGAELEKHLEAERMQKEKEAAHQAAVDRSRRMLEADDLESDSESESEDE
AAADGIVIRRAEGANAYAGDGEDVRTMSFDIFVKGQQMRVQRGATGEMARFRMFPFIERK
GRKVDAYGEGLDIGQWMRKGREIEEEGETEEVREAKKRKEEEEERQQQPPEPPSKYVTEE
VVLDLRSSVFFVDMEGLHDGQSIKTIIADLQPRKLIVVRSQEESTQNLVKFLDSTAGMTK
DVYHPSLAEEVRIGEHVQSYSLTLGDSISAGLAKKWSKYEGYEVVMVDGKIALSAGSTIP
TLELSSLVKPLVKEATAEETGEADGAAIAIDGVEAEAKPDLQTEEDVKPTPVELAEPVKE
ESVVQSATATISAPPSLPSSIFIGDLRLARLKHRLSTLTPPIPAEFAGEGVLVCGPGIHA
GEGGAKGGSIVAVRKVGEGQVVLEGSVGRVYWEVRRELYGGLAVVSAA
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atgatcactctcaccccgctctcatcctcggctgctgcatcgtcgtcctccgagccagta
tgttatttgttggagctggacgaagccaagatcctactggatatgggtcaaacggactac
agagctagtgcacaacggaccagctgggagtatgaggagaaagtgagagaactcgctcct
acattatccctcgtactgctatcacactccccgactacatacctgtccctgtatccctat
gctcgagcaagatggggattgacatgtccggtctacgccactcaaccaacagtcgaaatg
ggtcgagtagtttgtttatccgaagtagaaagttggagatcagagtgcaaagtagaagct
gttgaggatgatcaaggcgaggttgaaggaaagaagttggacaaggggaagaaaccactt
cgaggaccatttgtgcctacggtagaggaagtccatgaggcattcgattggatcaaggct
attcgatataatcaacctttacatcttggaggtgacctggcacatctgttactaacgcca
ttcccatctgggcacactctcggaggaacgctgttcaaattacgatcacccacttccggt
accgttctttacgcagtgggtatcaaccatactagtgaacggcatttggatggaatggtt
ggagcgcaaaacggtccatcgggctatgccgaaggagtgatgcgacccgacttgctgatt
gtagaaggcggacggagtctggttacaaatcctaagcggagggagagggagacggcgtta
cttgatcttgtcacttctactttggagtcgaatcattccgtcctccttccctccgatcct
tcacctcgtctactcgaactcctcatcctcctcgatcagcactggaccttcaagctgaac
actcaaacgaaacgacgtcctggtatccctcaaccgcctcctggagaagcgtggccatac
cctttatgtatcgttagtcggacagcgcaagacatggtcgcattcgccagaagtctgatt
gagtggatgggaggcgtcgtgaaagagagtggaggagaagaagtagtcaccgatatgagc
ggaaagcgcggcaagaagggaaagagaggaagaggagcaggagcaaccttaggctcagag
tatggcgctcttgacttcagacatgtgcaatttttcctcaacccgatggatcttctacac
gcgtatcccctgatgcgaccgaaacttatcctagctatcccgcctaccatgtcgcatagc
ccatcacgattcctgttcaccgctttggcgaacactgaaggcaatgtgatactgttgacg
acgcgaggggaagatcgaactttggcgcgagagctgtacgatcaatgggaagcgagtcag
gacgagaatgcgaagtggggacaagggaagattggatcattgcaaccactgtatggtcaa
ttgaaggttgagatggattcgaaagttgctctgaccggcgcggaactggaaaagcatctc
gaagcggaaagaatgcagaaggaaaaggaagctgcccatcaagcagccgtggatcgatca
cgtcgaatgcttgaagcggacgacctggagtccgactctgagagcgaatcggaagacgaa
gcggccgcggatggtatcgtcattcgtagagcagaaggcgccaacgcttatgcgggtgac
ggagaggacgttcggacaatgtcgtttgatattttcgtgaaaggtcagcagatgagagtt
cagagaggagcgacgggagagatggctagatttagaatgttccctttcatcgagcgaaag
gggaggaaggtggatgcttatggagaaggtctggatatcggacagtggatgagaaagggt
agggaaattgaagaagagggtgagacggaggaagtccgagaagcaaagaaaagaaaagag
gaagaagaggaacgtcagcaacaaccaccagaaccaccttcgaaatatgtcactgaagaa
gtggttctcgacttgcgatcatctgttttctttgttgacatggaaggtctacacgacgga
caatcgatcaaaactattattgcggacttgcaaccaaggaagcttatcgtggttcgttct
caagaagagtccacgcagaaccttgtcaagttcctcgactcaacagcaggcatgacgaaa
gatgtctaccacccgtctctcgccgaagaggttagaattggtgaacacgtgcaatcgtac
tctctcacactcggggacagtatctcagctggtttggcgaagaaatggtccaaatatgaa
ggatacgaagtcgtcatggttgatggcaaaattgccttatcagcaggctcgactatacct
actctcgagttgtcatctctagtcaagccccttgtcaaagaggcaacggctgaagaaact
ggagaagcggatggcgctgctattgcaattgatggtgtggaagccgaagccaaacccgac
ttgcaaaccgaggaggacgtgaagcccacacctgtagaactcgcagaaccagtcaaggag
gagtctgtggtacaaagtgcgaccgcaacaatatccgctccaccgtcccttccatcgtca
attttcattggcgatcttcgactcgctcgtctcaagcatcgcctatcaacactcacgcct
cctatccctgcagagttcgcgggtgaaggtgtgttggtctgtggaccaggtatacatgca
ggcgaggggggagcaaagggtggtagtattgtagctgtcaggaaggtcggagaagggcaa
gtcgtgttggaaggtagtgtagggagagtgtattgggaagtcagaagggaattgtacggt
ggtttggcggtcgttagtgctgcttag
DBGET
integrated database retrieval system
